Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10082140	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10082196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10874447	1.00[EUR][1000 genomes]
rs11164008	1.00[EUR][1000 genomes]
rs11808831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12057445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12063628	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12063669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1515142	1.00[EUR][1000 genomes]
rs1533373	1.00[EUR][1000 genomes]
rs17131643	1.00[EUR][1000 genomes]
rs172736	1.00[EUR][1000 genomes]
rs2911608	1.00[EUR][1000 genomes]
rs2994924	1.00[EUR][1000 genomes]
rs2994925	1.00[EUR][1000 genomes]
rs312398	1.00[EUR][1000 genomes]
rs6671641	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72943947	1.00[EUR][1000 genomes]
rs7413066	1.00[EUR][1000 genomes]
rs7529017	1.00[EUR][1000 genomes]
rs7533636	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs784834	1.00[EUR][1000 genomes]
rs9804106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv3524495	chr1:84881864-84885862	ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84878600-84883200	Weak transcription	Psoas Muscle	Psoas
2	chr1:84881600-84884000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:84881600-84893000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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