Variant report

Variant	rs11809958
Chromosome Location	chr1:103636080-103636081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11164694	0.82[ASN][1000 genomes]
rs11164706	0.85[ASN][1000 genomes]
rs12075533	0.85[ASN][1000 genomes]
rs12094089	0.85[ASN][1000 genomes]
rs12140409	0.85[ASN][1000 genomes]
rs12142969	0.85[ASN][1000 genomes]
rs1337198	0.82[ASN][1000 genomes]
rs1337199	0.82[ASN][1000 genomes]
rs1358459	0.85[ASN][1000 genomes]
rs1406127	0.85[ASN][1000 genomes]
rs1406129	0.85[ASN][1000 genomes]
rs1577806	0.82[ASN][1000 genomes]
rs1852655	0.85[ASN][1000 genomes]
rs3850460	0.82[ASN][1000 genomes]
rs3850461	0.82[ASN][1000 genomes]
rs3850462	0.82[ASN][1000 genomes]
rs3861744	0.82[ASN][1000 genomes]
rs61815034	0.85[ASN][1000 genomes]
rs61815035	0.85[ASN][1000 genomes]
rs61815037	0.85[ASN][1000 genomes]
rs61815038	0.85[ASN][1000 genomes]
rs6577361	0.82[ASN][1000 genomes]
rs6577362	0.85[ASN][1000 genomes]
rs6657840	0.85[ASN][1000 genomes]
rs6660886	0.85[ASN][1000 genomes]
rs6665601	0.85[ASN][1000 genomes]
rs6670472	0.85[ASN][1000 genomes]
rs6670951	0.85[ASN][1000 genomes]
rs6675440	0.82[ASN][1000 genomes]
rs6701783	0.85[ASN][1000 genomes]
rs6703986	0.85[ASN][1000 genomes]
rs7515978	0.82[ASN][1000 genomes]
rs7518542	0.82[ASN][1000 genomes]
rs7519151	0.82[ASN][1000 genomes]
rs7524445	0.85[ASN][1000 genomes]
rs7555795	0.85[ASN][1000 genomes]
rs872317	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv931600	chr1:103548397-104161031	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv498007	chr1:103573857-104107589	Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	esv2830089	chr1:103615938-103670474	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103628600-103636400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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