Variant report

Variant	rs12142969
Chromosome Location	chr1:103634064-103634065
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 135 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs10159431	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10399857	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10437029	0.90[ASN][1000 genomes]
rs10874680	0.82[ASN][1000 genomes]
rs10874681	0.95[ASN][1000 genomes]
rs10874682	0.95[ASN][1000 genomes]
rs10874683	0.95[ASN][1000 genomes]
rs10874684	0.95[ASN][1000 genomes]
rs10874685	0.95[ASN][1000 genomes]
rs10874686	0.90[ASN][1000 genomes]
rs10874687	0.95[ASN][1000 genomes]
rs10874688	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10874694	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10874695	0.83[ASN][1000 genomes]
rs11164673	0.84[ASN][1000 genomes]
rs11164676	0.95[ASN][1000 genomes]
rs11164679	0.95[ASN][1000 genomes]
rs11164683	0.95[ASN][1000 genomes]
rs11164684	0.95[ASN][1000 genomes]
rs11164690	0.95[ASN][1000 genomes]
rs11164694	0.97[ASN][1000 genomes]
rs11164706	1.00[ASN][1000 genomes]
rs11164711	0.90[ASN][1000 genomes]
rs11164715	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11164716	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11164717	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11164720	0.83[ASN][1000 genomes]
rs11164721	0.83[ASN][1000 genomes]
rs11802357	0.95[ASN][1000 genomes]
rs11809958	0.85[ASN][1000 genomes]
rs11810850	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12075533	0.95[ASN][1000 genomes]
rs12075811	0.83[ASN][1000 genomes]
rs12077815	0.95[ASN][1000 genomes]
rs12078066	0.80[ASN][1000 genomes]
rs12090752	0.90[ASN][1000 genomes]
rs12094089	1.00[ASN][1000 genomes]
rs12119790	0.85[ASN][1000 genomes]
rs12125839	0.95[ASN][1000 genomes]
rs12126095	0.90[ASN][1000 genomes]
rs12126147	0.95[ASN][1000 genomes]
rs12131628	0.92[ASN][1000 genomes]
rs12134283	0.95[ASN][1000 genomes]
rs12134285	0.95[ASN][1000 genomes]
rs12139369	0.95[ASN][1000 genomes]
rs12139417	0.95[ASN][1000 genomes]
rs12140409	1.00[ASN][1000 genomes]
rs12142507	0.92[ASN][1000 genomes]
rs12143615	0.95[ASN][1000 genomes]
rs12144257	0.82[EUR][1000 genomes]
rs1337171	0.95[ASN][1000 genomes]
rs1337172	0.95[ASN][1000 genomes]
rs1337173	0.95[ASN][1000 genomes]
rs1337198	0.97[ASN][1000 genomes]
rs1337199	0.97[ASN][1000 genomes]
rs13374757	0.85[ASN][1000 genomes]
rs13375484	0.95[ASN][1000 genomes]
rs1358459	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1406127	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1406129	0.95[ASN][1000 genomes]
rs1528204	0.83[ASN][1000 genomes]
rs1538039	0.95[ASN][1000 genomes]
rs1572516	0.95[ASN][1000 genomes]
rs1572517	0.95[ASN][1000 genomes]
rs1572519	0.95[ASN][1000 genomes]
rs1572520	0.95[ASN][1000 genomes]
rs1577806	0.97[ASN][1000 genomes]
rs17127531	0.93[ASN][1000 genomes]
rs1852655	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2178162	0.85[ASN][1000 genomes]
rs2889340	0.95[ASN][1000 genomes]
rs3850460	0.97[ASN][1000 genomes]
rs3850461	0.97[ASN][1000 genomes]
rs3850462	0.97[ASN][1000 genomes]
rs3861744	0.97[ASN][1000 genomes]
rs4098281	0.95[ASN][1000 genomes]
rs4332376	0.95[ASN][1000 genomes]
rs55926955	0.95[ASN][1000 genomes]
rs56335123	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56350510	0.95[ASN][1000 genomes]
rs57003205	0.95[ASN][1000 genomes]
rs59026756	0.95[ASN][1000 genomes]
rs61814977	0.95[ASN][1000 genomes]
rs61814982	0.95[ASN][1000 genomes]
rs61814997	0.92[ASN][1000 genomes]
rs61814998	0.95[ASN][1000 genomes]
rs61814999	0.95[ASN][1000 genomes]
rs61815034	1.00[ASN][1000 genomes]
rs61815035	1.00[ASN][1000 genomes]
rs61815037	1.00[ASN][1000 genomes]
rs61815038	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577358	0.95[ASN][1000 genomes]
rs6577361	0.97[ASN][1000 genomes]
rs6577362	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577363	0.87[ASN][1000 genomes]
rs6657840	0.95[ASN][1000 genomes]
rs6658609	0.95[ASN][1000 genomes]
rs6658707	0.95[ASN][1000 genomes]
rs6660886	1.00[ASN][1000 genomes]
rs6665601	0.95[ASN][1000 genomes]
rs6670472	1.00[ASN][1000 genomes]
rs6670951	1.00[ASN][1000 genomes]
rs6673525	0.95[ASN][1000 genomes]
rs6674625	0.90[ASN][1000 genomes]
rs6675440	0.97[ASN][1000 genomes]
rs6678780	0.95[ASN][1000 genomes]
rs6681533	0.95[ASN][1000 genomes]
rs6699034	0.85[ASN][1000 genomes]
rs6701783	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6703986	1.00[ASN][1000 genomes]
rs6704272	0.95[ASN][1000 genomes]
rs7411801	0.95[ASN][1000 genomes]
rs7515978	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7518542	0.97[ASN][1000 genomes]
rs7519151	0.97[ASN][1000 genomes]
rs7523058	0.92[ASN][1000 genomes]
rs7524445	1.00[ASN][1000 genomes]
rs7526605	0.90[ASN][1000 genomes]
rs7534313	0.95[ASN][1000 genomes]
rs7534696	0.87[ASN][1000 genomes]
rs7544745	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7550030	0.93[ASN][1000 genomes]
rs7555795	1.00[ASN][1000 genomes]
rs872317	0.97[ASN][1000 genomes]
rs9651143	0.85[ASN][1000 genomes]
rs9651144	0.85[ASN][1000 genomes]
rs9651151	0.85[ASN][1000 genomes]
rs9661944	0.82[ASN][1000 genomes]
rs9662902	0.95[ASN][1000 genomes]
rs9663072	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830893	chr1:103458498-103635579	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv931600	chr1:103548397-104161031	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv498007	chr1:103573857-104107589	Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv2830089	chr1:103615938-103670474	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103628600-103636400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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