Variant report
Variant | rs61815038 |
---|---|
Chromosome Location | chr1:103633139-103633140 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10159431 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs10399857 | 0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs10437029 | 0.90[ASN][1000 genomes] |
rs10874680 | 0.82[ASN][1000 genomes] |
rs10874681 | 0.95[ASN][1000 genomes] |
rs10874682 | 0.95[ASN][1000 genomes] |
rs10874683 | 0.95[ASN][1000 genomes] |
rs10874684 | 0.95[ASN][1000 genomes] |
rs10874685 | 0.95[ASN][1000 genomes] |
rs10874686 | 0.90[ASN][1000 genomes] |
rs10874687 | 0.95[ASN][1000 genomes] |
rs10874688 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs10874694 | 0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs10874695 | 0.83[ASN][1000 genomes] |
rs11164673 | 0.84[ASN][1000 genomes] |
rs11164676 | 0.95[ASN][1000 genomes] |
rs11164679 | 0.95[ASN][1000 genomes] |
rs11164683 | 0.95[ASN][1000 genomes] |
rs11164684 | 0.95[ASN][1000 genomes] |
rs11164690 | 0.95[ASN][1000 genomes] |
rs11164694 | 0.97[ASN][1000 genomes] |
rs11164706 | 1.00[ASN][1000 genomes] |
rs11164711 | 0.90[ASN][1000 genomes] |
rs11164715 | 0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs11164716 | 0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs11164717 | 0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs11164720 | 0.83[ASN][1000 genomes] |
rs11164721 | 0.83[ASN][1000 genomes] |
rs11802357 | 0.95[ASN][1000 genomes] |
rs11809958 | 0.85[ASN][1000 genomes] |
rs11810850 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs12075533 | 0.95[ASN][1000 genomes] |
rs12075811 | 0.83[ASN][1000 genomes] |
rs12077815 | 0.95[ASN][1000 genomes] |
rs12078066 | 0.80[ASN][1000 genomes] |
rs12090752 | 0.90[ASN][1000 genomes] |
rs12094089 | 1.00[ASN][1000 genomes] |
rs12119790 | 0.85[ASN][1000 genomes] |
rs12125839 | 0.95[ASN][1000 genomes] |
rs12126095 | 0.90[ASN][1000 genomes] |
rs12126147 | 0.95[ASN][1000 genomes] |
rs12131628 | 0.92[ASN][1000 genomes] |
rs12134283 | 0.95[ASN][1000 genomes] |
rs12134285 | 0.95[ASN][1000 genomes] |
rs12139369 | 0.95[ASN][1000 genomes] |
rs12139417 | 0.95[ASN][1000 genomes] |
rs12140409 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12142507 | 0.92[ASN][1000 genomes] |
rs12142969 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12143615 | 0.95[ASN][1000 genomes] |
rs1337171 | 0.95[ASN][1000 genomes] |
rs1337172 | 0.95[ASN][1000 genomes] |
rs1337173 | 0.95[ASN][1000 genomes] |
rs1337198 | 0.97[ASN][1000 genomes] |
rs1337199 | 0.97[ASN][1000 genomes] |
rs13374757 | 0.85[ASN][1000 genomes] |
rs13375484 | 0.95[ASN][1000 genomes] |
rs1358459 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1406127 | 0.95[ASN][1000 genomes] |
rs1406129 | 0.95[ASN][1000 genomes] |
rs1528204 | 0.83[ASN][1000 genomes] |
rs1538039 | 0.95[ASN][1000 genomes] |
rs1572516 | 0.95[ASN][1000 genomes] |
rs1572517 | 0.95[ASN][1000 genomes] |
rs1572519 | 0.95[ASN][1000 genomes] |
rs1572520 | 0.95[ASN][1000 genomes] |
rs1577806 | 0.97[ASN][1000 genomes] |
rs17127531 | 0.93[ASN][1000 genomes] |
rs1852655 | 0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2178162 | 0.85[ASN][1000 genomes] |
rs2889340 | 0.95[ASN][1000 genomes] |
rs3850460 | 0.97[ASN][1000 genomes] |
rs3850461 | 0.97[ASN][1000 genomes] |
rs3850462 | 0.97[ASN][1000 genomes] |
rs3861744 | 0.97[ASN][1000 genomes] |
rs4098281 | 0.95[ASN][1000 genomes] |
rs4332376 | 0.95[ASN][1000 genomes] |
rs55926955 | 0.95[ASN][1000 genomes] |
rs56335123 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs56350510 | 0.95[ASN][1000 genomes] |
rs57003205 | 0.95[ASN][1000 genomes] |
rs59026756 | 0.95[ASN][1000 genomes] |
rs61814977 | 0.95[ASN][1000 genomes] |
rs61814982 | 0.95[ASN][1000 genomes] |
rs61814997 | 0.92[ASN][1000 genomes] |
rs61814998 | 0.95[ASN][1000 genomes] |
rs61814999 | 0.95[ASN][1000 genomes] |
rs61815034 | 1.00[ASN][1000 genomes] |
rs61815035 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61815037 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6577358 | 0.95[ASN][1000 genomes] |
rs6577361 | 0.97[ASN][1000 genomes] |
rs6577362 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6577363 | 0.87[ASN][1000 genomes] |
rs6657840 | 0.95[ASN][1000 genomes] |
rs6658609 | 0.95[ASN][1000 genomes] |
rs6658707 | 0.95[ASN][1000 genomes] |
rs6660886 | 1.00[ASN][1000 genomes] |
rs6665601 | 0.95[ASN][1000 genomes] |
rs6670472 | 1.00[ASN][1000 genomes] |
rs6670951 | 1.00[ASN][1000 genomes] |
rs6673525 | 0.95[ASN][1000 genomes] |
rs6674625 | 0.90[ASN][1000 genomes] |
rs6675440 | 0.97[ASN][1000 genomes] |
rs6678780 | 0.95[ASN][1000 genomes] |
rs6681533 | 0.95[ASN][1000 genomes] |
rs6699034 | 0.85[ASN][1000 genomes] |
rs6701783 | 0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6703986 | 1.00[ASN][1000 genomes] |
rs6704272 | 0.95[ASN][1000 genomes] |
rs7411801 | 0.95[ASN][1000 genomes] |
rs7515978 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs7518542 | 0.97[ASN][1000 genomes] |
rs7519151 | 0.97[ASN][1000 genomes] |
rs7523058 | 0.92[ASN][1000 genomes] |
rs7524445 | 1.00[ASN][1000 genomes] |
rs7526605 | 0.90[ASN][1000 genomes] |
rs7534313 | 0.95[ASN][1000 genomes] |
rs7534696 | 0.87[ASN][1000 genomes] |
rs7544745 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs7550030 | 0.93[ASN][1000 genomes] |
rs7555795 | 1.00[ASN][1000 genomes] |
rs872317 | 0.97[ASN][1000 genomes] |
rs9651143 | 0.85[ASN][1000 genomes] |
rs9651144 | 0.85[ASN][1000 genomes] |
rs9651151 | 0.85[ASN][1000 genomes] |
rs9661944 | 0.82[ASN][1000 genomes] |
rs9662902 | 0.95[ASN][1000 genomes] |
rs9663072 | 0.95[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv522922 | chr1:103305021-103764640 | Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv830893 | chr1:103458498-103635579 | Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | nsv931600 | chr1:103548397-104161031 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
4 | nsv498007 | chr1:103573857-104107589 | Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
5 | esv2830089 | chr1:103615938-103670474 | Enhancers Weak transcription Active TSS | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:103628600-103636400 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |