Variant report
Variant | rs11810850 |
---|---|
Chromosome Location | chr1:103643990-103643991 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10159431 | 0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs10399857 | 0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs10493992 | 0.83[ASN][1000 genomes] |
rs10782923 | 0.83[ASN][1000 genomes] |
rs10782924 | 0.83[ASN][1000 genomes] |
rs10782925 | 0.83[ASN][1000 genomes] |
rs10874681 | 0.81[ASN][1000 genomes] |
rs10874682 | 0.81[ASN][1000 genomes] |
rs10874683 | 0.81[ASN][1000 genomes] |
rs10874684 | 0.81[ASN][1000 genomes] |
rs10874685 | 0.81[ASN][1000 genomes] |
rs10874687 | 0.81[ASN][1000 genomes] |
rs10874688 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs10874694 | 0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs10874695 | 0.88[ASN][1000 genomes] |
rs10874697 | 0.83[ASN][1000 genomes] |
rs11164676 | 0.81[ASN][1000 genomes] |
rs11164679 | 0.81[ASN][1000 genomes] |
rs11164683 | 0.81[ASN][1000 genomes] |
rs11164684 | 0.81[ASN][1000 genomes] |
rs11164690 | 0.81[ASN][1000 genomes] |
rs11164694 | 0.83[ASN][1000 genomes] |
rs11164706 | 0.86[ASN][1000 genomes] |
rs11164711 | 0.95[ASN][1000 genomes] |
rs11164715 | 0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs11164716 | 0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs11164717 | 0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs11164720 | 0.88[ASN][1000 genomes] |
rs11164721 | 0.88[ASN][1000 genomes] |
rs11164722 | 0.83[ASN][1000 genomes] |
rs11164732 | 0.83[ASN][1000 genomes] |
rs11802357 | 0.81[ASN][1000 genomes] |
rs12075533 | 0.90[ASN][1000 genomes] |
rs12075811 | 0.88[ASN][1000 genomes] |
rs12077815 | 0.81[ASN][1000 genomes] |
rs12081866 | 0.81[ASN][1000 genomes] |
rs12094089 | 0.86[ASN][1000 genomes] |
rs12095253 | 0.83[ASN][1000 genomes] |
rs12119790 | 0.90[ASN][1000 genomes] |
rs12125839 | 0.81[ASN][1000 genomes] |
rs12126147 | 0.81[ASN][1000 genomes] |
rs12134283 | 0.81[ASN][1000 genomes] |
rs12134285 | 0.81[ASN][1000 genomes] |
rs12139369 | 0.81[ASN][1000 genomes] |
rs12139417 | 0.81[ASN][1000 genomes] |
rs12140409 | 0.86[ASN][1000 genomes] |
rs12142969 | 0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs12143615 | 0.81[ASN][1000 genomes] |
rs12144257 | 0.88[EUR][1000 genomes] |
rs1337171 | 0.81[ASN][1000 genomes] |
rs1337172 | 0.81[ASN][1000 genomes] |
rs1337173 | 0.81[ASN][1000 genomes] |
rs1337198 | 0.83[ASN][1000 genomes] |
rs1337199 | 0.83[ASN][1000 genomes] |
rs13375484 | 0.81[ASN][1000 genomes] |
rs1358459 | 0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1406126 | 0.83[ASN][1000 genomes] |
rs1406127 | 0.90[ASN][1000 genomes] |
rs1406129 | 0.90[ASN][1000 genomes] |
rs1528200 | 0.83[ASN][1000 genomes] |
rs1528201 | 0.83[ASN][1000 genomes] |
rs1528203 | 0.83[ASN][1000 genomes] |
rs1528204 | 0.88[ASN][1000 genomes] |
rs1538039 | 0.81[ASN][1000 genomes] |
rs1572516 | 0.81[ASN][1000 genomes] |
rs1572517 | 0.81[ASN][1000 genomes] |
rs1572519 | 0.81[ASN][1000 genomes] |
rs1572520 | 0.81[ASN][1000 genomes] |
rs1577806 | 0.83[ASN][1000 genomes] |
rs1852655 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1881273 | 0.83[ASN][1000 genomes] |
rs1918884 | 0.83[ASN][1000 genomes] |
rs1918885 | 0.83[ASN][1000 genomes] |
rs1918886 | 0.83[ASN][1000 genomes] |
rs1918889 | 0.83[ASN][1000 genomes] |
rs2178162 | 0.90[ASN][1000 genomes] |
rs2376353 | 0.83[ASN][1000 genomes] |
rs2889340 | 0.81[ASN][1000 genomes] |
rs2889352 | 0.83[ASN][1000 genomes] |
rs3850460 | 0.83[ASN][1000 genomes] |
rs3850461 | 0.83[ASN][1000 genomes] |
rs3850462 | 0.83[ASN][1000 genomes] |
rs3861744 | 0.83[ASN][1000 genomes] |
rs4098281 | 0.81[ASN][1000 genomes] |
rs4332376 | 0.81[ASN][1000 genomes] |
rs4360545 | 0.81[ASN][1000 genomes] |
rs4372278 | 0.83[ASN][1000 genomes] |
rs4372279 | 0.83[ASN][1000 genomes] |
rs55926955 | 0.81[ASN][1000 genomes] |
rs56335123 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs56350510 | 0.81[ASN][1000 genomes] |
rs57003205 | 0.81[ASN][1000 genomes] |
rs59026756 | 0.81[ASN][1000 genomes] |
rs61814977 | 0.81[ASN][1000 genomes] |
rs61814982 | 0.81[ASN][1000 genomes] |
rs61814998 | 0.81[ASN][1000 genomes] |
rs61814999 | 0.81[ASN][1000 genomes] |
rs61815034 | 0.86[ASN][1000 genomes] |
rs61815035 | 0.86[ASN][1000 genomes] |
rs61815037 | 0.86[ASN][1000 genomes] |
rs61815038 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs61815057 | 0.83[ASN][1000 genomes] |
rs6577358 | 0.81[ASN][1000 genomes] |
rs6577361 | 0.83[ASN][1000 genomes] |
rs6577362 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6577363 | 0.93[ASN][1000 genomes] |
rs6577365 | 0.83[ASN][1000 genomes] |
rs6656514 | 0.83[ASN][1000 genomes] |
rs6657840 | 0.90[ASN][1000 genomes] |
rs6658609 | 0.81[ASN][1000 genomes] |
rs6658707 | 0.81[ASN][1000 genomes] |
rs6660886 | 0.86[ASN][1000 genomes] |
rs6665601 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs6667190 | 0.83[ASN][1000 genomes] |
rs6667824 | 0.83[ASN][1000 genomes] |
rs6670423 | 0.83[ASN][1000 genomes] |
rs6670472 | 0.86[ASN][1000 genomes] |
rs6670951 | 0.86[ASN][1000 genomes] |
rs6673525 | 0.81[ASN][1000 genomes] |
rs6674625 | 0.95[ASN][1000 genomes] |
rs6675440 | 0.83[ASN][1000 genomes] |
rs6678780 | 0.81[ASN][1000 genomes] |
rs6681533 | 0.81[ASN][1000 genomes] |
rs6699034 | 0.90[ASN][1000 genomes] |
rs6701783 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs6703986 | 0.86[ASN][1000 genomes] |
rs6704272 | 0.81[ASN][1000 genomes] |
rs7411801 | 0.81[ASN][1000 genomes] |
rs7418839 | 0.83[ASN][1000 genomes] |
rs7515978 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs7517870 | 0.82[ASN][1000 genomes] |
rs7518542 | 0.83[ASN][1000 genomes] |
rs7519151 | 0.83[ASN][1000 genomes] |
rs7524445 | 0.86[ASN][1000 genomes] |
rs7526605 | 0.95[ASN][1000 genomes] |
rs7534313 | 0.81[ASN][1000 genomes] |
rs7544745 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs7555795 | 0.86[ASN][1000 genomes] |
rs872317 | 0.83[ASN][1000 genomes] |
rs954565 | 0.83[ASN][1000 genomes] |
rs954566 | 0.83[ASN][1000 genomes] |
rs9651143 | 0.90[ASN][1000 genomes] |
rs9651144 | 0.90[ASN][1000 genomes] |
rs9651151 | 0.90[ASN][1000 genomes] |
rs9662902 | 0.81[ASN][1000 genomes] |
rs9663072 | 0.81[ASN][1000 genomes] |
rs9943066 | 0.83[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv522922 | chr1:103305021-103764640 | Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv931600 | chr1:103548397-104161031 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
3 | nsv498007 | chr1:103573857-104107589 | Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
4 | esv2830089 | chr1:103615938-103670474 | Enhancers Weak transcription Active TSS | n/a | n/a | inside rSNPs | diseases |
5 | nsv526337 | chr1:103636607-103704266 | Enhancers Weak transcription Active TSS Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
6 | nsv947540 | chr1:103643208-103649306 | Enhancers Weak transcription Active TSS | n/a | n/a | inside rSNPs | diseases |
7 | esv3385964 | chr1:103643914-103646312 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:103637200-103646000 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
2 | chr1:103641200-103644000 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
3 | chr1:103643800-103644400 | Enhancers | A549 | lung |