Variant report

Variant	rs11813889
Chromosome Location	chr10:18369091-18369092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11817171	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16916829	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16916837	1.00[ASN][1000 genomes]
rs58142633	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7067765	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090868	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74118097	0.88[AFR][1000 genomes]
rs74118099	0.88[AFR][1000 genomes]
rs74120203	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550039	chr10:18363924-18425519	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv550040	chr10:18365380-18399519	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1045547	chr10:18366749-18397247	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18367000-18370000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr10:18367400-18369600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr10:18368000-18369600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr10:18368000-18370000	Enhancers	Fetal Heart	heart
5	chr10:18368200-18369600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr10:18368400-18370000	Enhancers	Brain Substantia Nigra	brain
7	chr10:18368600-18369600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:18368600-18369800	Enhancers	Brain Angular Gyrus	brain
9	chr10:18368600-18369800	Enhancers	Brain Cingulate Gyrus	brain
10	chr10:18368800-18369400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr10:18368800-18370200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:18368800-18370400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:18369000-18371600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:18369000-18374400	Weak transcription	Fetal Lung	lung
15	chr10:18369000-18374600	Weak transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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