Variant report

Variant	rs11814885
Chromosome Location	chr10:116423380-116423381
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11813218	1.00[AMR][1000 genomes]
rs11813881	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11814078	1.00[MEX][hapmap]
rs11814176	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11814279	1.00[AMR][1000 genomes]
rs11814968	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34937709	1.00[AMR][1000 genomes]
rs35182174	1.00[AMR][1000 genomes]
rs35664557	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35952431	1.00[AMR][1000 genomes]
rs56834445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60246497	1.00[AMR][1000 genomes]
rs60906486	1.00[AMR][1000 genomes]
rs61606135	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116408600-116441400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:116408800-116427400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:116409600-116423600	Weak transcription	Esophagus	oesophagus
4	chr10:116412600-116423800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr10:116415600-116438200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:116418800-116425400	Enhancers	Left Ventricle	heart
7	chr10:116419200-116424400	Enhancers	Fetal Heart	heart
8	chr10:116421600-116423600	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr10:116421800-116425200	Enhancers	Right Ventricle	heart
10	chr10:116421800-116425800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:116422000-116423400	Enhancers	Fetal Muscle Trunk	muscle
12	chr10:116422000-116423800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:116422000-116423800	Enhancers	Brain Hippocampus Middle	brain
14	chr10:116422000-116423800	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr10:116422000-116423800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr10:116422000-116424000	Enhancers	Brain Cingulate Gyrus	brain
17	chr10:116422000-116424000	Enhancers	Fetal Lung	lung
18	chr10:116422000-116424000	Enhancers	Fetal Muscle Leg	muscle
19	chr10:116422000-116424200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr10:116422000-116424200	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr10:116422000-116424200	Enhancers	Adipose Nuclei	Adipose
22	chr10:116422000-116424400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:116422200-116423600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:116422200-116423600	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr10:116422200-116423600	Enhancers	Brain Angular Gyrus	brain
26	chr10:116422200-116424000	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr10:116422200-116424000	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr10:116422200-116424200	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr10:116422200-116424200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr10:116422200-116424200	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr10:116422200-116424200	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr10:116422200-116424200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:116422200-116424200	Enhancers	Pancreas	Pancrea
34	chr10:116422200-116424200	Enhancers	Right Atrium	heart
35	chr10:116422200-116424200	Enhancers	HSMMtube	muscle
36	chr10:116422200-116424400	Enhancers	Brain Anterior Caudate	brain
37	chr10:116422200-116425200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:116422400-116423400	Weak transcription	Gastric	stomach
39	chr10:116422400-116423400	Weak transcription	Lung	lung
40	chr10:116422400-116423400	Weak transcription	Stomach Smooth Muscle	stomach
41	chr10:116422400-116423800	Enhancers	Brain Germinal Matrix	brain
42	chr10:116422400-116424200	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr10:116422400-116424200	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr10:116422600-116423600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr10:116422600-116423600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr10:116422600-116424000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr10:116422600-116424000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr10:116422600-116424200	Enhancers	Fetal Intestine Small	intestine
49	chr10:116422600-116424400	Enhancers	Fetal Intestine Large	intestine
50	chr10:116422600-116424400	Enhancers	HSMM	muscle

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