Variant report

Variant	rs34937709
Chromosome Location	chr10:116487719-116487720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11813218	1.00[AMR][1000 genomes]
rs11813881	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11814176	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11814279	1.00[AMR][1000 genomes]
rs11814885	1.00[AMR][1000 genomes]
rs11814968	1.00[AMR][1000 genomes]
rs35182174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35664557	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35952431	1.00[AMR][1000 genomes]
rs56834445	1.00[AMR][1000 genomes]
rs60246497	1.00[AMR][1000 genomes]
rs60906486	1.00[AMR][1000 genomes]
rs61606135	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1042170	chr10:116455043-116504871	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1046888	chr10:116455043-116505640	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1038822	chr10:116455647-116497204	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116482800-116488600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:116483400-116493800	Weak transcription	Right Atrium	heart
3	chr10:116486600-116497000	Weak transcription	Lung	lung
4	chr10:116486800-116488800	Weak transcription	Gastric	stomach
5	chr10:116486800-116488800	Weak transcription	Right Ventricle	heart
6	chr10:116486800-116494400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:116486800-116514600	Weak transcription	Pancreas	Pancrea
8	chr10:116487000-116488600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr10:116487000-116493200	Weak transcription	Adipose Nuclei	Adipose
10	chr10:116487200-116488800	Weak transcription	Fetal Heart	heart
11	chr10:116487200-116492600	Weak transcription	Liver	Liver
12	chr10:116487600-116488800	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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