Variant report

Variant	rs11813881
Chromosome Location	chr10:116480623-116480624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11813218	1.00[AMR][1000 genomes]
rs11814078	1.00[MEX][hapmap]
rs11814176	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11814279	1.00[AMR][1000 genomes]
rs11814885	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11814968	1.00[AMR][1000 genomes]
rs34937709	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35182174	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35664557	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35952431	1.00[AMR][1000 genomes]
rs56834445	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60246497	1.00[AMR][1000 genomes]
rs60906486	1.00[AMR][1000 genomes]
rs61606135	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1042170	chr10:116455043-116504871	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1046888	chr10:116455043-116505640	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1038822	chr10:116455647-116497204	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116474200-116482800	Weak transcription	Brain Angular Gyrus	brain
2	chr10:116474400-116480800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:116474400-116482200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:116474400-116486200	Weak transcription	Lung	lung
5	chr10:116475000-116483400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:116475400-116480800	Weak transcription	Gastric	stomach
7	chr10:116475600-116484600	Enhancers	Adipose Nuclei	Adipose
8	chr10:116476200-116483200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:116476600-116484800	Enhancers	Liver	Liver
10	chr10:116477400-116481000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr10:116477400-116486200	Weak transcription	Right Ventricle	heart
12	chr10:116478400-116480800	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:116478800-116484600	Enhancers	Stomach Mucosa	stomach
14	chr10:116479200-116480800	Weak transcription	Small Intestine	intestine
15	chr10:116479400-116480800	Weak transcription	Psoas Muscle	Psoas
16	chr10:116479400-116482200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr10:116479400-116482800	Weak transcription	HepG2	liver
18	chr10:116479600-116483600	Weak transcription	A549	lung
19	chr10:116479800-116482800	Weak transcription	Brain Substantia Nigra	brain
20	chr10:116480200-116481200	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr10:116480200-116481400	Flanking Active TSS	Fetal Heart	heart
22	chr10:116480400-116480800	Enhancers	Brain Anterior Caudate	brain
23	chr10:116480400-116480800	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr10:116480400-116481200	Enhancers	HSMMtube	muscle
25	chr10:116480400-116484600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr10:116480400-116485400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:116480600-116480800	Enhancers	Brain Hippocampus Middle	brain
28	chr10:116480600-116480800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
29	chr10:116480600-116481000	Enhancers	Hela-S3	cervix
30	chr10:116480600-116481200	Enhancers	Aorta	Aorta
31	chr10:116480600-116481200	Enhancers	Pancreas	Pancrea
32	chr10:116480600-116481200	Enhancers	Rectal Smooth Muscle	rectum
33	chr10:116480600-116481400	Enhancers	Primary hematopoietic stem cells	blood
34	chr10:116480600-116481400	Enhancers	Duodenum Mucosa	Duodenum
35	chr10:116480600-116481400	Enhancers	Right Atrium	heart
36	chr10:116480600-116481800	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr10:116480600-116483600	Enhancers	Left Ventricle	heart

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