Variant report

Variant	rs11816439
Chromosome Location	chr10:91463005-91463006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	WRNIP1	chr10:91463005-91463391	GM12878	blood:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:91369983..91372122-chr10:91461089..91464056,2	K562	blood:
2	chr10:91439034..91440797-chr10:91461524..91463146,2	K562	blood:
3	chr10:91401983..91406312-chr10:91459063..91463449,10	K562	blood:
4	chr10:91402369..91405488-chr10:91459565..91463449,8	K562	blood:
5	chr10:91402715..91410625-chr10:91458897..91464646,18	MCF-7	breast:
6	chr10:91432281..91434628-chr10:91462753..91464911,2	MCF-7	breast:
7	chr10:91410370..91413096-chr10:91461622..91464286,2	K562	blood:
8	chr10:91315217..91317113-chr10:91460581..91463355,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000235100	TF binding region
ENSG00000225836	Chromatin interaction
ENSG00000152779	Chromatin interaction
ENSG00000249962	Chromatin interaction
ENSG00000232936	Chromatin interaction
ENSG00000152782	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11815863	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1409320	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1555867	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17125847	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17126187	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17126255	0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17127289	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17127307	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17127699	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17127932	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2900801	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41524248	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933516	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4934500	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58701936	1.00[ASN][1000 genomes]
rs61853458	0.94[EUR][1000 genomes]
rs61853459	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61854360	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61854361	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61854362	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61854424	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61854425	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61854426	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61854427	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61854431	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61854432	0.94[EUR][1000 genomes]
rs61854435	0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869183	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869185	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869802	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61870760	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61870761	0.89[EUR][1000 genomes]
rs61870762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61870764	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61870766	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61870791	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61870819	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61870820	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61870821	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61870822	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61870823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61872466	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61872467	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586212	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586219	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586223	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101125	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895137	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91460000-91465400	Active TSS	K562	blood
2	chr10:91460600-91463200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:91461600-91546600	Weak transcription	Small Intestine	intestine
4	chr10:91461800-91505800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:91462000-91463400	Flanking Active TSS	HUVEC	blood vessel
6	chr10:91462000-91464000	Flanking Active TSS	Dnd41	blood
7	chr10:91462000-91505800	Weak transcription	Left Ventricle	heart
8	chr10:91462200-91463200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:91462200-91463200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:91462200-91463200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:91462200-91463200	Enhancers	Fetal Heart	heart
12	chr10:91462200-91463400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:91462200-91466600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:91462200-91467000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr10:91462200-91467200	Weak transcription	Fetal Brain Male	brain
16	chr10:91462200-91470000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:91462200-91470000	Weak transcription	Ovary	ovary
18	chr10:91462200-91472000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:91462200-91474000	Weak transcription	Spleen	Spleen
20	chr10:91462200-91476600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr10:91462200-91476600	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr10:91462200-91476600	Weak transcription	Fetal Intestine Large	intestine
23	chr10:91462200-91477600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr10:91462200-91478000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr10:91462200-91480400	Weak transcription	Fetal Stomach	stomach
26	chr10:91462200-91480600	Weak transcription	Fetal Muscle Leg	muscle
27	chr10:91462200-91482400	Weak transcription	Pancreas	Pancrea
28	chr10:91462200-91486400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr10:91462200-91505600	Weak transcription	Esophagus	oesophagus
30	chr10:91462200-91505800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:91462200-91505800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr10:91462200-91505800	Weak transcription	Gastric	stomach
33	chr10:91462200-91505800	Weak transcription	Lung	lung
34	chr10:91462400-91463400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr10:91462400-91463400	Flanking Active TSS	NHEK	skin
36	chr10:91462400-91464000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr10:91462400-91466400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:91462400-91467000	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr10:91462400-91472000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr10:91462400-91476000	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr10:91462400-91477600	Weak transcription	Duodenum Mucosa	Duodenum
42	chr10:91462400-91479200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr10:91462400-91480000	Weak transcription	Fetal Kidney	kidney
44	chr10:91462400-91480600	Weak transcription	Primary T cells from cord blood	blood
45	chr10:91462400-91480600	Weak transcription	Fetal Intestine Small	intestine
46	chr10:91462400-91484600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr10:91462400-91488600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr10:91462400-91505600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr10:91462600-91463200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
50	chr10:91462600-91463200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell

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