Variant report

Variant	rs61870819
Chromosome Location	chr10:91548021-91548022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11815863	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11816439	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409320	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1555867	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17125847	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17126187	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17126255	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17127289	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17127307	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17127699	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17127932	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2900801	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41524248	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933516	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4934500	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58701936	1.00[ASN][1000 genomes]
rs61853459	1.00[ASN][1000 genomes]
rs61854360	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61854361	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61854362	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61854424	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61854425	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61854426	1.00[ASN][1000 genomes]
rs61854427	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61854431	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61854435	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869183	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869184	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869185	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869215	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869218	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869802	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61870760	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61870762	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61870764	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61870766	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61870791	0.90[AMR][1000 genomes]
rs61870820	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61870821	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61870822	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61870823	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61872466	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61872467	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6586212	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6586219	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586222	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586223	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101125	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895137	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7898020	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914918	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046241	chr10:91478562-91614437	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv869080	chr10:91498641-91712834	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1036581	chr10:91526705-91691536	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv948132	chr10:91546180-91550682	Weak transcription Bivalent Enhancer Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a
5	esv3337343	chr10:91546722-91549420	Enhancers Weak transcription Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91506400-91549000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:91506600-91554200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:91523000-91549400	Weak transcription	Adipose Nuclei	Adipose
4	chr10:91523400-91549000	Weak transcription	K562	blood
5	chr10:91529600-91549000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr10:91533200-91554400	Weak transcription	NHEK	skin
7	chr10:91540600-91554200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr10:91540800-91549600	Weak transcription	Lung	lung
9	chr10:91540800-91554000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr10:91541000-91548800	Weak transcription	Dnd41	blood
11	chr10:91541000-91549000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:91541200-91549000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr10:91541200-91549200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr10:91541200-91552000	Weak transcription	HMEC	breast
15	chr10:91541200-91554800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr10:91541400-91548800	Weak transcription	Primary T cells from cord blood	blood
17	chr10:91541400-91549000	Weak transcription	Fetal Thymus	thymus
18	chr10:91541400-91549200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:91541400-91550200	Weak transcription	Fetal Intestine Small	intestine
20	chr10:91541400-91560000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr10:91541600-91549000	Weak transcription	Thymus	Thymus
22	chr10:91541600-91552200	Weak transcription	Hela-S3	cervix
23	chr10:91541600-91554000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:91542600-91554000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr10:91544400-91549000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr10:91544600-91554000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr10:91547600-91549000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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