Variant report

Variant	rs11817023
Chromosome Location	chr10:4425777-4425778
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11813500	1.00[AMR][1000 genomes]
rs11815971	1.00[AMR][1000 genomes]
rs11818101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11819442	1.00[AMR][1000 genomes]
rs1616155	1.00[AMR][1000 genomes]
rs1679412	1.00[AMR][1000 genomes]
rs1679432	1.00[AMR][1000 genomes]
rs17132623	1.00[AMR][1000 genomes]
rs17132691	1.00[AMR][1000 genomes]
rs17132695	1.00[AMR][1000 genomes]
rs17132748	1.00[AMR][1000 genomes]
rs17132779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1751278	1.00[AMR][1000 genomes]
rs1751281	1.00[AMR][1000 genomes]
rs1751294	1.00[AMR][1000 genomes]
rs74111157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74111159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894786	chr10:4385379-4441989	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4425000-4425800	Enhancers	NHDF-Ad	bronchial
2	chr10:4425000-4426000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:4425200-4426000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:4425200-4426200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr10:4425200-4427000	Enhancers	Rectal Smooth Muscle	rectum
6	chr10:4425600-4425800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:4425600-4425800	Flanking Active TSS	Fetal Brain Male	brain
8	chr10:4425600-4425800	Enhancers	Fetal Brain Female	brain
9	chr10:4425600-4426000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:4425600-4426000	Enhancers	Fetal Kidney	kidney
11	chr10:4425600-4426200	Enhancers	Colon Smooth Muscle	Colon
12	chr10:4425600-4426600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:4425600-4426800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:4425600-4426800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:4425600-4426800	Flanking Active TSS	Osteobl	bone
16	chr10:4425600-4427000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:4425600-4427000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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