Variant report
| Variant | rs74111157 |
|---|---|
| Chromosome Location | chr10:4421967-4421968 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT1 | chr10:4421903-4422493 | Hela-S3 | cervix: | n/a | chr10:4422270-4422284 chr10:4422271-4422282 chr10:4422267-4422287 chr10:4422273-4422281 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| LINC00703 | TF binding region |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11813500 | 1.00[AMR][1000 genomes] |
| rs11815971 | 1.00[AMR][1000 genomes] |
| rs11817023 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11818101 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11819442 | 1.00[AMR][1000 genomes] |
| rs1616155 | 1.00[AMR][1000 genomes] |
| rs1679412 | 1.00[AMR][1000 genomes] |
| rs1679432 | 1.00[AMR][1000 genomes] |
| rs17132623 | 1.00[AMR][1000 genomes] |
| rs17132691 | 1.00[AMR][1000 genomes] |
| rs17132695 | 1.00[AMR][1000 genomes] |
| rs17132748 | 1.00[AMR][1000 genomes] |
| rs17132779 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1751278 | 1.00[AMR][1000 genomes] |
| rs1751281 | 1.00[AMR][1000 genomes] |
| rs1751294 | 1.00[AMR][1000 genomes] |
| rs74111159 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv894786 | chr10:4385379-4441989 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv894787 | chr10:4385379-4857717 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 3 | esv3391292 | chr10:4421602-4424800 | Weak transcription Enhancers | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:4416200-4424000 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
