Variant report

Variant	rs1751278
Chromosome Location	chr10:4473818-4473819
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11813500	1.00[AMR][1000 genomes]
rs11815971	1.00[AMR][1000 genomes]
rs11817023	1.00[AMR][1000 genomes]
rs11818101	1.00[AMR][1000 genomes]
rs11819442	1.00[AMR][1000 genomes]
rs1616155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1679412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1679432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132623	1.00[AMR][1000 genomes]
rs17132691	1.00[AMR][1000 genomes]
rs17132695	1.00[AMR][1000 genomes]
rs17132748	1.00[AMR][1000 genomes]
rs17132779	1.00[AMR][1000 genomes]
rs1751281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1751294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1751308	0.81[LWK][hapmap]
rs2478583	1.00[EUR][1000 genomes]
rs74111157	1.00[AMR][1000 genomes]
rs74111159	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1051290	chr10:4435293-4493026	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv540461	chr10:4435293-4493026	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4470000-4481400	Weak transcription	Aorta	Aorta
2	chr10:4470400-4479200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:4473400-4474200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:4473400-4474200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:4473400-4474200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:4473400-4474200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:4473400-4474200	Enhancers	Placenta Amnion	Placenta Amnion
8	chr10:4473400-4474400	Enhancers	HSMMtube	muscle
9	chr10:4473400-4475000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:4473600-4474000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr10:4473600-4474200	Flanking Active TSS	A549	lung
12	chr10:4473600-4474200	Enhancers	HSMM	muscle
13	chr10:4473600-4476200	Weak transcription	Fetal Muscle Leg	muscle
14	chr10:4473800-4474000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:4473800-4474000	Flanking Active TSS	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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