Variant report

Variant	rs11818432
Chromosome Location	chr10:58939671-58939672
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 194 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:162)

rs_ID	r²[population]
rs10159693	0.81[AMR][1000 genomes]
rs10159783	0.81[AMR][1000 genomes]
rs10159887	0.81[AMR][1000 genomes]
rs10159908	0.81[AMR][1000 genomes]
rs10160089	0.91[EUR][1000 genomes]
rs10160131	0.91[EUR][1000 genomes]
rs10160133	0.91[EUR][1000 genomes]
rs10825980	0.81[AMR][1000 genomes]
rs11005633	0.81[AMR][1000 genomes]
rs11005634	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11005635	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11005636	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11005637	0.81[AMR][1000 genomes]
rs11005638	0.81[AMR][1000 genomes]
rs11005640	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11005641	0.81[AMR][1000 genomes]
rs11005642	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11005643	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11005644	0.81[AMR][1000 genomes]
rs11005645	0.81[AMR][1000 genomes]
rs11005646	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11005647	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11005648	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11005649	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11005650	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11005656	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11005657	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11005658	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11005659	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11005660	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11005675	0.91[EUR][1000 genomes]
rs11005676	0.91[EUR][1000 genomes]
rs11005678	0.86[EUR][1000 genomes]
rs11005681	0.91[EUR][1000 genomes]
rs11005682	0.91[EUR][1000 genomes]
rs11005683	0.91[EUR][1000 genomes]
rs11005684	0.91[EUR][1000 genomes]
rs11005688	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11005692	0.83[EUR][1000 genomes]
rs11498142	0.91[EUR][1000 genomes]
rs11817703	0.81[AMR][1000 genomes]
rs12242006	0.91[EUR][1000 genomes]
rs12244109	0.81[AMR][1000 genomes]
rs12244376	0.91[EUR][1000 genomes]
rs12246901	0.82[EUR][1000 genomes]
rs12246965	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12247094	0.81[AMR][1000 genomes]
rs12247244	0.91[EUR][1000 genomes]
rs12247265	0.81[EUR][1000 genomes]
rs12247721	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12247842	0.90[EUR][1000 genomes]
rs12248271	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12248383	0.88[EUR][1000 genomes]
rs12248920	0.81[AMR][1000 genomes]
rs12249184	0.81[AMR][1000 genomes]
rs12249333	0.81[AMR][1000 genomes]
rs12249336	0.87[EUR][1000 genomes]
rs12249748	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12250940	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12252740	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12253024	0.90[EUR][1000 genomes]
rs12253650	0.81[AMR][1000 genomes]
rs12253767	0.81[AMR][1000 genomes]
rs12254838	0.99[EUR][1000 genomes]
rs12255868	0.81[AMR][1000 genomes]
rs12256059	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12256534	0.82[EUR][1000 genomes]
rs12256536	0.81[AMR][1000 genomes]
rs12256746	0.91[EUR][1000 genomes]
rs12256850	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12257106	0.91[EUR][1000 genomes]
rs12258368	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12258514	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12259332	0.81[AMR][1000 genomes]
rs12259884	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12260077	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12260953	0.81[AMR][1000 genomes]
rs12261393	0.91[EUR][1000 genomes]
rs12262199	0.91[EUR][1000 genomes]
rs12263769	0.81[AMR][1000 genomes]
rs12264630	0.81[AMR][1000 genomes]
rs12269040	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12766671	0.81[AMR][1000 genomes]
rs12767717	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1394111	0.90[EUR][1000 genomes]
rs1394112	0.89[EUR][1000 genomes]
rs17608226	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1847409	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1875772	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1915692	0.91[EUR][1000 genomes]
rs1915693	0.91[EUR][1000 genomes]
rs1915694	0.91[EUR][1000 genomes]
rs1915695	0.89[EUR][1000 genomes]
rs28480357	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3105304	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3107508	0.90[EUR][1000 genomes]
rs34013264	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34146353	0.81[AMR][1000 genomes]
rs34594161	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34732397	0.81[AMR][1000 genomes]
rs34784552	0.83[EUR][1000 genomes]
rs35334292	0.81[AMR][1000 genomes]
rs35351600	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35692436	0.82[EUR][1000 genomes]
rs4130804	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56082808	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61848446	0.81[AMR][1000 genomes]
rs61848448	0.81[AMR][1000 genomes]
rs61850175	0.81[AMR][1000 genomes]
rs61850176	0.81[AMR][1000 genomes]
rs61850177	0.81[AMR][1000 genomes]
rs61850179	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61850205	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67282369	0.81[AMR][1000 genomes]
rs67467515	0.81[AMR][1000 genomes]
rs7067844	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7072214	0.91[EUR][1000 genomes]
rs7072641	0.91[EUR][1000 genomes]
rs7072950	0.91[EUR][1000 genomes]
rs7073369	0.91[EUR][1000 genomes]
rs7075069	0.91[EUR][1000 genomes]
rs7077008	0.91[EUR][1000 genomes]
rs7078639	0.90[EUR][1000 genomes]
rs7079891	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7080282	0.91[EUR][1000 genomes]
rs7080809	0.96[EUR][1000 genomes]
rs7082149	0.91[EUR][1000 genomes]
rs7082260	0.91[EUR][1000 genomes]
rs7082897	0.91[EUR][1000 genomes]
rs7086024	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7088435	0.91[EUR][1000 genomes]
rs7089692	0.87[EUR][1000 genomes]
rs7090557	0.91[EUR][1000 genomes]
rs7090594	0.91[EUR][1000 genomes]
rs7091186	0.87[EUR][1000 genomes]
rs7091214	0.87[EUR][1000 genomes]
rs7091651	0.88[EUR][1000 genomes]
rs7092438	0.87[EUR][1000 genomes]
rs7092768	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7093642	0.91[EUR][1000 genomes]
rs7093904	0.91[EUR][1000 genomes]
rs7097168	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7100491	0.90[EUR][1000 genomes]
rs71476355	0.81[AMR][1000 genomes]
rs7896592	0.81[AMR][1000 genomes]
rs7897071	0.81[AMR][1000 genomes]
rs7900082	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7900777	0.81[AMR][1000 genomes]
rs7901155	0.91[EUR][1000 genomes]
rs7901263	0.81[AMR][1000 genomes]
rs7906620	0.99[EUR][1000 genomes]
rs7911192	0.81[AMR][1000 genomes]
rs7911719	0.81[AMR][1000 genomes]
rs7912016	0.83[AMR][1000 genomes]
rs7912290	0.81[AMR][1000 genomes]
rs7913331	0.81[AMR][1000 genomes]
rs7917184	0.81[AMR][1000 genomes]
rs7918221	0.91[EUR][1000 genomes]
rs7921321	0.91[EUR][1000 genomes]
rs7922116	0.99[EUR][1000 genomes]
rs957051	0.81[AMR][1000 genomes]
rs9651349	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895513	chr10:58672533-58979792	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757391	chr10:58822244-58948207	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759759	chr10:58822244-58948207	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv895517	chr10:58836950-58957774	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2756345	chr10:58846594-59027194	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv895521	chr10:58849853-58963458	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2829927	chr10:58849853-58979792	Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv895523	chr10:58853784-58945720	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv895524	chr10:58853784-58953960	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv895525	chr10:58853784-58963458	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv895526	chr10:58853784-58970006	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv895527	chr10:58853784-58979792	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv895528	chr10:58853784-58991581	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv2753099	chr10:58883172-58948207	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv895539	chr10:58892275-58945720	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv895540	chr10:58892275-58950588	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv551111	chr10:58892275-58953960	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv34551	chr10:58893093-58948207	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv430241	chr10:58902170-58943359	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv2755179	chr10:58902170-58948085	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv818770	chr10:58905847-58945720	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv467286	chr10:58905847-58948207	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv551114	chr10:58905847-58948207	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv470951	chr10:58905847-58970006	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv551115	chr10:58913651-58963458	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv467287	chr10:58913651-58970006	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv551116	chr10:58913651-58970006	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
28	esv3367662	chr10:58926008-58972421	Enhancers Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv551117	chr10:58938552-59007742	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
30	nsv895543	chr10:58938552-59210800	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
31	nsv895544	chr10:58938552-59282980	Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
32	nsv895545	chr10:58938552-59313872	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58930200-58959200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:58933000-58947200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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