Variant report

Variant	rs56082808
Chromosome Location	chr10:58924300-58924301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 222 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:156)

rs_ID	r²[population]
rs10159693	0.81[AMR][1000 genomes]
rs10159783	0.81[AMR][1000 genomes]
rs10159887	0.81[AMR][1000 genomes]
rs10159908	0.81[AMR][1000 genomes]
rs10160089	0.86[EUR][1000 genomes]
rs10160131	0.86[EUR][1000 genomes]
rs10160133	0.86[EUR][1000 genomes]
rs10825980	0.81[AMR][1000 genomes]
rs11005633	0.81[AMR][1000 genomes]
rs11005634	0.83[AMR][1000 genomes]
rs11005635	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11005636	0.81[AMR][1000 genomes]
rs11005637	0.81[AMR][1000 genomes]
rs11005638	0.81[AMR][1000 genomes]
rs11005640	0.81[AMR][1000 genomes]
rs11005641	0.81[AMR][1000 genomes]
rs11005642	0.81[AMR][1000 genomes]
rs11005643	0.81[AMR][1000 genomes]
rs11005644	0.81[AMR][1000 genomes]
rs11005645	0.81[AMR][1000 genomes]
rs11005646	0.81[AMR][1000 genomes]
rs11005647	0.81[AMR][1000 genomes]
rs11005648	0.81[AMR][1000 genomes]
rs11005649	0.83[AMR][1000 genomes]
rs11005650	0.83[AMR][1000 genomes]
rs11005656	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11005657	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11005658	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11005659	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11005660	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11005675	0.86[EUR][1000 genomes]
rs11005676	0.86[EUR][1000 genomes]
rs11005678	0.83[EUR][1000 genomes]
rs11005681	0.86[EUR][1000 genomes]
rs11005682	0.86[EUR][1000 genomes]
rs11005683	0.86[EUR][1000 genomes]
rs11005684	0.86[EUR][1000 genomes]
rs11005688	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11498142	0.86[EUR][1000 genomes]
rs11817703	0.81[AMR][1000 genomes]
rs11818432	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12242006	0.86[EUR][1000 genomes]
rs12244109	0.81[AMR][1000 genomes]
rs12244376	0.86[EUR][1000 genomes]
rs12246965	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12247094	0.81[AMR][1000 genomes]
rs12247244	0.86[EUR][1000 genomes]
rs12247721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12247842	0.85[EUR][1000 genomes]
rs12248271	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12248383	0.84[EUR][1000 genomes]
rs12248920	0.81[AMR][1000 genomes]
rs12249184	0.81[AMR][1000 genomes]
rs12249333	0.81[AMR][1000 genomes]
rs12249336	0.83[EUR][1000 genomes]
rs12249748	0.81[AMR][1000 genomes]
rs12250940	0.81[AMR][1000 genomes]
rs12252740	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12253024	0.85[EUR][1000 genomes]
rs12253650	0.81[AMR][1000 genomes]
rs12253767	0.81[AMR][1000 genomes]
rs12254838	0.93[EUR][1000 genomes]
rs12255868	0.81[AMR][1000 genomes]
rs12256059	0.83[AMR][1000 genomes]
rs12256536	0.81[AMR][1000 genomes]
rs12256746	0.86[EUR][1000 genomes]
rs12256850	0.83[AMR][1000 genomes]
rs12257106	0.86[EUR][1000 genomes]
rs12258368	0.81[AMR][1000 genomes]
rs12258514	0.81[AMR][1000 genomes]
rs12259332	0.81[AMR][1000 genomes]
rs12259884	0.81[AMR][1000 genomes]
rs12260077	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12260953	0.81[AMR][1000 genomes]
rs12261393	0.86[EUR][1000 genomes]
rs12262199	0.86[EUR][1000 genomes]
rs12263769	0.81[AMR][1000 genomes]
rs12264630	0.81[AMR][1000 genomes]
rs12269040	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12766671	0.81[AMR][1000 genomes]
rs12767717	0.83[AMR][1000 genomes]
rs1394111	0.85[EUR][1000 genomes]
rs1394112	0.84[EUR][1000 genomes]
rs17608226	0.83[AMR][1000 genomes]
rs1847409	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1875772	0.81[AMR][1000 genomes]
rs1915692	0.86[EUR][1000 genomes]
rs1915693	0.86[EUR][1000 genomes]
rs1915694	0.86[EUR][1000 genomes]
rs1915695	0.84[EUR][1000 genomes]
rs28480357	0.83[AMR][1000 genomes]
rs3105304	0.83[AMR][1000 genomes]
rs3107508	0.85[EUR][1000 genomes]
rs34013264	0.83[AMR][1000 genomes]
rs34146353	0.81[AMR][1000 genomes]
rs34594161	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34732397	0.81[AMR][1000 genomes]
rs35334292	0.81[AMR][1000 genomes]
rs35351600	0.83[AMR][1000 genomes]
rs4130804	0.83[AMR][1000 genomes]
rs61848446	0.81[AMR][1000 genomes]
rs61848448	0.81[AMR][1000 genomes]
rs61850175	0.81[AMR][1000 genomes]
rs61850176	0.81[AMR][1000 genomes]
rs61850177	0.81[AMR][1000 genomes]
rs61850179	0.83[AMR][1000 genomes]
rs61850205	0.80[AMR][1000 genomes]
rs67282369	0.81[AMR][1000 genomes]
rs67467515	0.81[AMR][1000 genomes]
rs7067844	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7072214	0.86[EUR][1000 genomes]
rs7072641	0.86[EUR][1000 genomes]
rs7072950	0.86[EUR][1000 genomes]
rs7073369	0.86[EUR][1000 genomes]
rs7075069	0.86[EUR][1000 genomes]
rs7077008	0.86[EUR][1000 genomes]
rs7078639	0.85[EUR][1000 genomes]
rs7079891	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7080282	0.86[EUR][1000 genomes]
rs7080809	0.91[EUR][1000 genomes]
rs7082149	0.86[EUR][1000 genomes]
rs7082260	0.86[EUR][1000 genomes]
rs7082897	0.86[EUR][1000 genomes]
rs7086024	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7088435	0.86[EUR][1000 genomes]
rs7089692	0.83[EUR][1000 genomes]
rs7090557	0.86[EUR][1000 genomes]
rs7090594	0.86[EUR][1000 genomes]
rs7091186	0.82[EUR][1000 genomes]
rs7091214	0.82[EUR][1000 genomes]
rs7091651	0.83[EUR][1000 genomes]
rs7092438	0.83[EUR][1000 genomes]
rs7092768	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7093642	0.86[EUR][1000 genomes]
rs7093904	0.86[EUR][1000 genomes]
rs7097168	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7100491	0.85[EUR][1000 genomes]
rs71476355	0.81[AMR][1000 genomes]
rs7896592	0.81[AMR][1000 genomes]
rs7897071	0.81[AMR][1000 genomes]
rs7900082	0.81[AMR][1000 genomes]
rs7900777	0.81[AMR][1000 genomes]
rs7901155	0.86[EUR][1000 genomes]
rs7901263	0.81[AMR][1000 genomes]
rs7906620	0.93[EUR][1000 genomes]
rs7911192	0.81[AMR][1000 genomes]
rs7911719	0.81[AMR][1000 genomes]
rs7912016	0.83[AMR][1000 genomes]
rs7912290	0.81[AMR][1000 genomes]
rs7913331	0.81[AMR][1000 genomes]
rs7917184	0.81[AMR][1000 genomes]
rs7918221	0.86[EUR][1000 genomes]
rs7921321	0.86[EUR][1000 genomes]
rs7922116	0.93[EUR][1000 genomes]
rs957051	0.81[AMR][1000 genomes]
rs9651349	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:66 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895513	chr10:58672533-58979792	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757391	chr10:58822244-58948207	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759759	chr10:58822244-58948207	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv895517	chr10:58836950-58957774	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv895520	chr10:58843951-58933549	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2756345	chr10:58846594-59027194	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv895521	chr10:58849853-58963458	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2829927	chr10:58849853-58979792	Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv895523	chr10:58853784-58945720	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv895524	chr10:58853784-58953960	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv895525	chr10:58853784-58963458	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv895526	chr10:58853784-58970006	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv895527	chr10:58853784-58979792	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv895528	chr10:58853784-58991581	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv34583	chr10:58883172-58936909	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv2754933	chr10:58883172-58936909	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv2753099	chr10:58883172-58948207	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv467280	chr10:58885646-58936553	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv551109	chr10:58885646-58936553	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv895529	chr10:58885646-58936553	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv895530	chr10:58885646-58937708	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv895531	chr10:58885646-58938552	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv467281	chr10:58890510-58936553	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv551110	chr10:58890510-58936553	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv895533	chr10:58892275-58924473	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv895534	chr10:58892275-58933549	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv895535	chr10:58892275-58936553	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv895536	chr10:58892275-58936553	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv895537	chr10:58892275-58937708	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
30	nsv895538	chr10:58892275-58938552	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
31	nsv895539	chr10:58892275-58945720	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
32	nsv895540	chr10:58892275-58950588	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
33	nsv551111	chr10:58892275-58953960	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
34	esv34869	chr10:58893093-58936909	Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
35	esv35059	chr10:58893093-58936909	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
36	esv34551	chr10:58893093-58948207	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
37	nsv8675	chr10:58893608-58937217	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
38	esv3315241	chr10:58894689-58937280	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
39	esv3315252	chr10:58894813-58937152	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
40	nsv819714	chr10:58897818-58937144	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
41	nsv895541	chr10:58897917-58935217	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
42	esv2421453	chr10:58897917-58936909	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
43	nsv895542	chr10:58897917-58937708	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
44	nsv825401	chr10:58901386-58937112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
45	nsv442580	chr10:58902170-58936907	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
46	esv2763980	chr10:58902170-58936909	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
47	esv34557	chr10:58902170-58936909	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
48	esv34631	chr10:58902170-58936909	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
49	nsv1047569	chr10:58902170-58936909	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
50	nsv430241	chr10:58902170-58943359	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58923200-58924400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:58923400-58925000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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