Variant report

Variant	rs11820679
Chromosome Location	chr11:74666754-74666755
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:74658556..74662613-chr11:74662682..74668168,9	MCF-7	breast:
2	chr11:74664840..74666882-chr11:74679624..74681629,2	K562	blood:
3	chr11:74664096..74666867-chr11:74674120..74676753,2	MCF-7	breast:
4	chr11:74664693..74667610-chr11:74699219..74700728,2	K562	blood:
5	chr11:74665537..74669916-chr11:74669929..74673689,6	K562	blood:
6	chr11:74665322..74668359-chr11:74698382..74701504,3	MCF-7	breast:
7	chr11:74665174..74667770-chr11:74669572..74672146,3	MCF-7	breast:
8	chr11:74665918..74669327-chr11:74673492..74675614,3	MCF-7	breast:
9	chr11:74665039..74667224-chr11:74668149..74670219,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000118363	Chromatin interaction
ENSG00000162139	Chromatin interaction
ENSG00000166435	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11820673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11821589	0.85[AMR][1000 genomes]
rs11825000	1.00[AMR][1000 genomes]
rs11825444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17133490	0.85[AMR][1000 genomes]
rs36194564	1.00[AMR][1000 genomes]
rs7104291	1.00[AMR][1000 genomes]
rs7115861	1.00[AMR][1000 genomes]
rs7125952	0.85[AMR][1000 genomes]
rs7126450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7932944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7945185	1.00[AMR][1000 genomes]
rs7946321	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74661200-74688600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:74661600-74686000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:74661800-74672600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:74661800-74675000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:74661800-74699200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:74661800-74699400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:74662000-74669800	Weak transcription	Fetal Intestine Small	intestine
8	chr11:74662000-74677600	Weak transcription	HSMMtube	muscle
9	chr11:74662000-74680800	Weak transcription	Fetal Kidney	kidney
10	chr11:74662000-74682200	Weak transcription	Aorta	Aorta
11	chr11:74662000-74682800	Weak transcription	Colonic Mucosa	Colon
12	chr11:74662200-74667000	Weak transcription	Brain Substantia Nigra	brain
13	chr11:74662200-74667000	Weak transcription	Psoas Muscle	Psoas
14	chr11:74662200-74667000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:74662200-74671000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:74662200-74671600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:74662200-74672800	Weak transcription	Gastric	stomach
18	chr11:74662200-74672800	Weak transcription	Stomach Mucosa	stomach
19	chr11:74662200-74677000	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr11:74662200-74677200	Weak transcription	Fetal Muscle Leg	muscle
21	chr11:74662200-74677200	Weak transcription	Thymus	Thymus
22	chr11:74662200-74677800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:74662200-74677800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:74662200-74699600	Weak transcription	Esophagus	oesophagus
25	chr11:74662400-74667000	Weak transcription	Right Ventricle	heart
26	chr11:74662400-74667200	Weak transcription	Brain Hippocampus Middle	brain
27	chr11:74662400-74667400	Weak transcription	Brain Anterior Caudate	brain
28	chr11:74662400-74667600	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr11:74662400-74668400	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr11:74662400-74668600	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr11:74662400-74668600	Weak transcription	HSMM	muscle
32	chr11:74662400-74669000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:74662400-74670800	Weak transcription	HUVEC	blood vessel
34	chr11:74662400-74671000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr11:74662400-74673000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr11:74662400-74675200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr11:74662400-74677800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr11:74662400-74677800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr11:74662400-74677800	Weak transcription	Fetal Stomach	stomach
40	chr11:74662400-74680600	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr11:74662400-74691400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr11:74662600-74670400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr11:74662600-74676600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr11:74662600-74682800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:74662600-74686000	Weak transcription	Fetal Brain Male	brain
46	chr11:74662800-74667200	Weak transcription	Left Ventricle	heart
47	chr11:74662800-74670400	Weak transcription	Spleen	Spleen
48	chr11:74662800-74677800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr11:74662800-74682200	Weak transcription	Lung	lung
50	chr11:74663000-74669400	Strong transcription	Hela-S3	cervix

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