Variant report

Variant	rs7126450
Chromosome Location	chr11:74675867-74675868
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:74658212..74660081-chr11:74673726..74676528,2	K562	blood:
2	chr11:74659170..74661534-chr11:74674901..74677094,2	MCF-7	breast:
3	chr11:74667515..74669031-chr11:74674563..74676301,2	K562	blood:
4	chr11:74667515..74671064-chr11:74674801..74677690,4	K562	blood:
5	chr11:74664096..74666867-chr11:74674120..74676753,2	MCF-7	breast:
6	chr11:74674253..74676791-chr11:74679436..74681206,2	K562	blood:
7	chr11:74672805..74674764-chr11:74674829..74677378,2	K562	blood:
8	chr11:74658109..74660081-chr11:74673726..74677717,3	K562	blood:
9	chr11:74674114..74677070-chr11:74712523..74714236,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000118363	Chromatin interaction
ENSG00000166435	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11820673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11820679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11821589	1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs11825000	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11825444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17133490	0.85[AMR][1000 genomes]
rs36194564	1.00[AMR][1000 genomes]
rs7104291	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7115861	1.00[AMR][1000 genomes]
rs7125952	1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs7932944	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7945185	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7946321	0.82[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74661200-74688600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:74661600-74686000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:74661800-74699200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:74661800-74699400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:74662000-74677600	Weak transcription	HSMMtube	muscle
6	chr11:74662000-74680800	Weak transcription	Fetal Kidney	kidney
7	chr11:74662000-74682200	Weak transcription	Aorta	Aorta
8	chr11:74662000-74682800	Weak transcription	Colonic Mucosa	Colon
9	chr11:74662200-74677000	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr11:74662200-74677200	Weak transcription	Fetal Muscle Leg	muscle
11	chr11:74662200-74677200	Weak transcription	Thymus	Thymus
12	chr11:74662200-74677800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:74662200-74677800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:74662200-74699600	Weak transcription	Esophagus	oesophagus
15	chr11:74662400-74677800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:74662400-74677800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:74662400-74677800	Weak transcription	Fetal Stomach	stomach
18	chr11:74662400-74680600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:74662400-74691400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:74662600-74676600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr11:74662600-74682800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:74662600-74686000	Weak transcription	Fetal Brain Male	brain
23	chr11:74662800-74677800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:74662800-74682200	Weak transcription	Lung	lung
25	chr11:74663200-74680000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr11:74664000-74680400	Weak transcription	HMEC	breast
27	chr11:74664200-74677200	Weak transcription	Fetal Lung	lung
28	chr11:74664400-74678000	Weak transcription	Brain Germinal Matrix	brain
29	chr11:74664600-74677800	Weak transcription	NHLF	lung
30	chr11:74665600-74686000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:74666200-74677200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:74667600-74689000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:74667800-74677800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr11:74667800-74678400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr11:74667800-74683200	Weak transcription	Small Intestine	intestine
36	chr11:74667800-74692200	Strong transcription	Dnd41	blood
37	chr11:74668000-74677800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr11:74668000-74680800	Weak transcription	Brain Angular Gyrus	brain
39	chr11:74668600-74682400	Weak transcription	Right Ventricle	heart
40	chr11:74669200-74677600	Weak transcription	Duodenum Mucosa	Duodenum
41	chr11:74670600-74677200	Weak transcription	Osteobl	bone
42	chr11:74671000-74677800	Weak transcription	Placenta	Placenta
43	chr11:74671000-74682200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr11:74671200-74677800	Weak transcription	Spleen	Spleen
45	chr11:74671400-74677200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:74671600-74686400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr11:74671800-74682000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr11:74672000-74676400	Weak transcription	NH-A	brain
49	chr11:74672000-74676600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr11:74672000-74677800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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