Variant report

Variant	rs7945185
Chromosome Location	chr11:74624843-74624844
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74617868..74619628-chr11:74622578..74625095,2	K562	blood:
2	chr11:74624254..74626945-chr11:74627904..74632353,5	K562	blood:

Variant related genes	Relation type
ENSG00000166435	Chromatin interaction
ENSG00000241170	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11820673	1.00[AMR][1000 genomes]
rs11820679	1.00[AMR][1000 genomes]
rs11821589	1.00[ASW][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11823875	1.00[ASW][hapmap];1.00[GIH][hapmap];0.83[YRI][hapmap]
rs11825000	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825444	1.00[AMR][1000 genomes]
rs17133490	1.00[GIH][hapmap];0.85[AMR][1000 genomes]
rs36194564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7104291	1.00[ASW][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7115861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7125952	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7126450	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7932944	1.00[ASW][hapmap];1.00[GIH][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7946321	0.83[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74587400-74629600	Weak transcription	Gastric	stomach
2	chr11:74588400-74630600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr11:74588400-74636000	Weak transcription	NHLF	lung
4	chr11:74594800-74646600	Weak transcription	Small Intestine	intestine
5	chr11:74598400-74629600	Weak transcription	Colon Smooth Muscle	Colon
6	chr11:74606600-74626400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:74607600-74637400	Weak transcription	Pancreas	Pancrea
8	chr11:74612400-74629600	Weak transcription	NHDF-Ad	bronchial
9	chr11:74612800-74634000	Weak transcription	Psoas Muscle	Psoas
10	chr11:74613400-74632600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:74613600-74627800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:74613800-74628600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:74613800-74637400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr11:74614600-74633600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:74615000-74629600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr11:74615000-74629600	Weak transcription	NH-A	brain
17	chr11:74615000-74636200	Weak transcription	A549	lung
18	chr11:74615200-74632600	Strong transcription	Liver	Liver
19	chr11:74615200-74637200	Weak transcription	HMEC	breast
20	chr11:74615400-74626400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr11:74615600-74626600	Strong transcription	Dnd41	blood
22	chr11:74615800-74633600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr11:74615800-74644800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr11:74616000-74634200	Strong transcription	Duodenum Mucosa	Duodenum
25	chr11:74616000-74634800	Strong transcription	Fetal Intestine Large	intestine
26	chr11:74616200-74626800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:74616200-74634000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:74616400-74633600	Strong transcription	Stomach Smooth Muscle	stomach
29	chr11:74616400-74634400	Strong transcription	Primary T cells from cord blood	blood
30	chr11:74616400-74646000	Weak transcription	Spleen	Spleen
31	chr11:74616400-74656200	Weak transcription	Stomach Mucosa	stomach
32	chr11:74616600-74629200	Weak transcription	Fetal Thymus	thymus
33	chr11:74616600-74632600	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr11:74616600-74632600	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr11:74617000-74631800	Weak transcription	HUVEC	blood vessel
36	chr11:74617200-74630000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr11:74617200-74635200	Strong transcription	Fetal Muscle Trunk	muscle
38	chr11:74617400-74626200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr11:74617400-74627200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:74617400-74629600	Weak transcription	Lung	lung
41	chr11:74617400-74648200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr11:74618000-74627200	Strong transcription	Brain Anterior Caudate	brain
43	chr11:74618000-74659600	Weak transcription	Esophagus	oesophagus
44	chr11:74618400-74628000	Weak transcription	Rectal Smooth Muscle	rectum
45	chr11:74618400-74653800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr11:74618600-74625800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:74619000-74629600	Weak transcription	Aorta	Aorta
48	chr11:74619200-74629200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr11:74619200-74639800	Weak transcription	K562	blood
50	chr11:74619600-74627800	Weak transcription	NHEK	skin

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