Variant report

Variant	rs11821162
Chromosome Location	chr11:66285589-66285590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:66283972..66286341-chr11:66409087..66411174,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11821143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822113	0.93[AFR][1000 genomes]
rs11826683	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11827783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11828370	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12099209	1.00[AMR][1000 genomes]
rs28441671	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28637515	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28640072	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28672995	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28687888	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56021141	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56039471	1.00[AMR][1000 genomes]
rs57458798	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57814854	1.00[AMR][1000 genomes]
rs57925533	1.00[AMR][1000 genomes]
rs58024886	1.00[AMR][1000 genomes]
rs58149913	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61303821	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61610137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
2	nsv897780	chr11:66083129-66362997	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv468601	chr11:66234023-66296114	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
4	nsv555224	chr11:66234023-66296114	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	nsv522277	chr11:66234023-66493825	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
6	nsv934228	chr11:66277759-66288927	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66278600-66311000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:66278800-66286400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr11:66278800-66286600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr11:66278800-66287000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:66278800-66288000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr11:66278800-66288200	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr11:66278800-66288400	Weak transcription	Colonic Mucosa	Colon
8	chr11:66278800-66290400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:66278800-66290600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:66278800-66294000	Weak transcription	Aorta	Aorta
11	chr11:66278800-66309800	Weak transcription	HSMMtube	muscle
12	chr11:66278800-66312800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:66279000-66286400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr11:66279000-66286400	Weak transcription	Brain Substantia Nigra	brain
15	chr11:66279000-66286600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:66279000-66286600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr11:66279000-66287000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr11:66279000-66288200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:66279000-66288200	Weak transcription	Stomach Mucosa	stomach
20	chr11:66279000-66288400	Weak transcription	GM12878-XiMat	blood
21	chr11:66279000-66290200	Weak transcription	HMEC	breast
22	chr11:66279000-66291200	Weak transcription	Psoas Muscle	Psoas
23	chr11:66279000-66303000	Weak transcription	Primary B cells from cord blood	blood
24	chr11:66279000-66306200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr11:66279000-66309200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr11:66279000-66313000	Weak transcription	Small Intestine	intestine
27	chr11:66279200-66286200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr11:66279200-66286400	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr11:66279200-66286600	Weak transcription	Primary B cells from peripheral blood	blood
30	chr11:66279200-66286800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr11:66279200-66286800	Weak transcription	HepG2	liver
32	chr11:66279200-66287000	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr11:66279200-66287600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr11:66279200-66288000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr11:66279200-66288200	Weak transcription	Rectal Smooth Muscle	rectum
36	chr11:66279200-66288400	Weak transcription	NHLF	lung
37	chr11:66279200-66288600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr11:66279200-66288600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:66279200-66290600	Weak transcription	Fetal Heart	heart
40	chr11:66279200-66295400	Weak transcription	Fetal Kidney	kidney
41	chr11:66279200-66309800	Weak transcription	HUVEC	blood vessel
42	chr11:66279200-66310400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr11:66279200-66310800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr11:66279200-66310800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr11:66279400-66295000	Weak transcription	K562	blood
46	chr11:66279400-66311000	Weak transcription	Fetal Brain Male	brain
47	chr11:66279400-66311200	Weak transcription	Right Atrium	heart
48	chr11:66279800-66305200	Strong transcription	Fetal Muscle Leg	muscle
49	chr11:66280000-66286800	Weak transcription	Colon Smooth Muscle	Colon
50	chr11:66280000-66292400	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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