Variant report

Variant	rs61610137
Chromosome Location	chr11:66278923-66278924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66240065..66243058-chr11:66275897..66279906,3	MCF-7	breast:
2	chr11:66277230..66279524-chr11:66443471..66447477,3	K562	blood:
3	chr11:66276194..66279522-chr11:66281470..66284393,4	MCF-7	breast:
4	chr11:66271226..66274092-chr11:66277706..66279394,2	K562	blood:
5	chr11:66277351..66279482-chr11:66383310..66385762,3	K562	blood:
6	chr11:66275530..66280458-chr11:66280685..66284919,6	K562	blood:
7	chr11:66277334..66280308-chr11:66282116..66284343,2	MCF-7	breast:
8	chr11:66277255..66279154-chr11:66443896..66445716,2	MCF-7	breast:
9	chr11:66277249..66279573-chr11:66442892..66445928,3	K562	blood:
10	chr11:66234037..66235984-chr11:66277120..66279562,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000254986	Chromatin interaction
ENSG00000255517	Chromatin interaction
ENSG00000173914	Chromatin interaction
ENSG00000174483	Chromatin interaction
ENSG00000248643	Chromatin interaction
ENSG00000174547	Chromatin interaction
ENSG00000174516	Chromatin interaction
ENSG00000239306	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11821143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11821162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822113	0.93[AFR][1000 genomes]
rs11826683	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11827783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11828370	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12099209	1.00[AMR][1000 genomes]
rs28441671	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28637515	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28640072	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28672995	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28687888	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56021141	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56039471	1.00[AMR][1000 genomes]
rs57458798	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57814854	1.00[AMR][1000 genomes]
rs57925533	1.00[AMR][1000 genomes]
rs58024886	1.00[AMR][1000 genomes]
rs58149913	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61303821	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
2	nsv897780	chr11:66083129-66362997	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv468601	chr11:66234023-66296114	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
4	nsv555224	chr11:66234023-66296114	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	nsv522277	chr11:66234023-66493825	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
6	nsv934228	chr11:66277759-66288927	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66277600-66279000	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr11:66277600-66279000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:66277600-66279000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
4	chr11:66277600-66279200	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr11:66277600-66279200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:66277800-66279000	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr11:66277800-66279000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:66277800-66279000	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr11:66277800-66279000	Flanking Active TSS	Primary T cells from cord blood	blood
10	chr11:66277800-66279000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
11	chr11:66277800-66279000	Flanking Active TSS	Fetal Muscle Trunk	muscle
12	chr11:66277800-66279200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:66278000-66279000	Active TSS	Muscle Satellite Cultured Cells	--
14	chr11:66278000-66279000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:66278000-66279000	Active TSS	HSMM	muscle
16	chr11:66278000-66279200	Active TSS	H1 Cell Line	embryonic stem cell
17	chr11:66278000-66279200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:66278000-66279200	Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr11:66278200-66279000	Flanking Active TSS	Duodenum Mucosa	Duodenum
20	chr11:66278400-66279000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:66278400-66279000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:66278400-66279000	Flanking Active TSS	Brain Anterior Caudate	brain
23	chr11:66278400-66279000	Flanking Active TSS	Brain Cingulate Gyrus	brain
24	chr11:66278400-66279000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
25	chr11:66278400-66279000	Flanking Active TSS	Colon Smooth Muscle	Colon
26	chr11:66278400-66279000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr11:66278400-66279000	Flanking Active TSS	Fetal Intestine Small	intestine
28	chr11:66278400-66279000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
29	chr11:66278400-66279000	Flanking Active TSS	Rectal Smooth Muscle	rectum
30	chr11:66278400-66279000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
31	chr11:66278400-66279000	Flanking Active TSS	HUVEC	blood vessel
32	chr11:66278400-66279000	Flanking Active TSS	NH-A	brain
33	chr11:66278400-66279000	Flanking Active TSS	Osteobl	bone
34	chr11:66278400-66279200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:66278400-66279200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr11:66278400-66279200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:66278400-66279200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr11:66278400-66279200	Flanking Active TSS	Stomach Smooth Muscle	stomach
39	chr11:66278400-66279200	Flanking Active TSS	Dnd41	blood
40	chr11:66278400-66279200	Flanking Active TSS	Hela-S3	cervix
41	chr11:66278400-66279400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
42	chr11:66278600-66279000	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr11:66278600-66279000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
44	chr11:66278600-66279000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
45	chr11:66278600-66279000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:66278600-66279000	Flanking Active TSS	Brain Angular Gyrus	brain
47	chr11:66278600-66279000	Flanking Active TSS	Brain Hippocampus Middle	brain
48	chr11:66278600-66279000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr11:66278600-66279000	Flanking Active TSS	Fetal Brain Male	brain
50	chr11:66278600-66279000	Flanking Active TSS	Fetal Heart	heart

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