Variant report

Variant	rs11822620
Chromosome Location	chr11:85998107-85998108
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85992844..85996245-chr11:85997438..86001010,4	K562	blood:
2	chr11:85996870..85999859-chr11:86001615..86003194,2	K562	blood:
3	chr11:85997706..86000207-chr11:86001867..86004535,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254783	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11822899	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12417008	0.97[ASN][1000 genomes]
rs12422031	0.91[ASN][1000 genomes]
rs17210182	0.91[ASN][1000 genomes]
rs17210189	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17210259	0.95[ASN][1000 genomes]
rs17210343	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17210350	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17817610	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17817659	0.95[ASN][1000 genomes]
rs17817701	0.95[ASN][1000 genomes]
rs17817719	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.97[ASN][1000 genomes]
rs2036187	0.97[ASN][1000 genomes]
rs2374703	0.91[ASN][1000 genomes]
rs2374704	0.91[ASN][1000 genomes]
rs34602206	0.97[ASN][1000 genomes]
rs3920052	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.97[ASN][1000 genomes]
rs4474462	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs59478404	0.91[ASN][1000 genomes]
rs61039312	0.91[ASN][1000 genomes]
rs7104068	0.95[ASN][1000 genomes]
rs7114903	0.92[ASN][1000 genomes]
rs7116376	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7116719	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.94[ASN][1000 genomes]
rs7939108	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7944685	0.94[ASN][1000 genomes]
rs7952019	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv898055	chr11:85968623-86000757	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv508643	chr11:85988577-86047719	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85957400-86008000	Weak transcription	Psoas Muscle	Psoas
2	chr11:85957800-85999800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:85974800-86000000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:85975000-86002600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:85984400-86002800	Weak transcription	Fetal Intestine Small	intestine
6	chr11:85986000-86002600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:85988800-86000000	Weak transcription	Brain Substantia Nigra	brain
8	chr11:85989200-85999800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:85989600-85998200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr11:85989600-86002800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:85989600-86002800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr11:85989600-86003000	Weak transcription	NH-A	brain
13	chr11:85989800-85999200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:85990600-85998200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr11:85990600-86002400	Weak transcription	HepG2	liver
16	chr11:85990800-86002600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:85991200-86002600	Weak transcription	Osteobl	bone
18	chr11:85991400-85998200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr11:85991400-86002600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr11:85991400-86003200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:85991600-86002600	Weak transcription	NHDF-Ad	bronchial
22	chr11:85991600-86002800	Weak transcription	Placenta	Placenta
23	chr11:85992200-85998200	Weak transcription	Primary B cells from cord blood	blood
24	chr11:85992200-86000800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:85992200-86003200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:85995600-85999200	Weak transcription	Lung	lung
27	chr11:85995600-85999200	Weak transcription	Ovary	ovary
28	chr11:85995600-85999400	Weak transcription	Brain Anterior Caudate	brain
29	chr11:85995600-85999800	Weak transcription	K562	blood
30	chr11:85995600-86000200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr11:85995600-86000800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:85995600-86001400	Weak transcription	Spleen	Spleen
33	chr11:85995600-86001800	Weak transcription	Liver	Liver
34	chr11:85995600-86002600	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr11:85995600-86002600	Weak transcription	HMEC	breast
36	chr11:85995600-86002800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr11:85995600-86002800	Weak transcription	A549	lung
38	chr11:85995600-86003000	Weak transcription	NHLF	lung
39	chr11:85995600-86012600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr11:85995600-86012800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr11:85995800-85998200	Weak transcription	Primary T cells from cord blood	blood
42	chr11:85995800-85998200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr11:85995800-85998200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:85995800-85998600	Weak transcription	Fetal Muscle Trunk	muscle
45	chr11:85995800-85998600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr11:85995800-85998800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr11:85995800-85999200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr11:85995800-85999400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:85995800-85999800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:85995800-86000000	Weak transcription	Hela-S3	cervix

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