Variant report

Variant	rs17210189
Chromosome Location	chr11:85913576-85913577
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:85911743..85914059-chr11:85915051..85916646,2	MCF-7	breast:
2	chr11:85903738..85905603-chr11:85911140..85914043,2	K562	blood:
3	chr11:85904057..85906241-chr11:85912023..85914262,2	K562	blood:
4	chr11:85908463..85910477-chr11:85912676..85914784,2	K562	blood:
5	chr11:85844122..85845739-chr11:85912791..85915095,2	K562	blood:
6	chr11:85912105..85914194-chr11:85954802..85957064,2	K562	blood:
7	chr11:85768233..85770657-chr11:85911985..85913899,2	K562	blood:
8	chr11:85913237..85915607-chr11:85952212..85954653,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000074266	Chromatin interaction
ENSG00000254699	Chromatin interaction
ENSG00000254502	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11822620	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11822899	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12417008	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12422031	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17210182	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17210259	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17210343	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17210350	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17210546	1.00[EUR][1000 genomes]
rs17817610	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17817659	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17817701	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17817719	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2036187	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2374703	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2374704	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34602206	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3920052	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41452444	1.00[GIH][hapmap]
rs4474462	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59478404	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61039312	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104068	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7105530	1.00[EUR][1000 genomes]
rs7114903	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7115094	1.00[EUR][1000 genomes]
rs7116376	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7116719	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7939108	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7944685	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85908600-85920000	Weak transcription	Small Intestine	intestine
2	chr11:85911200-85916400	Weak transcription	Hela-S3	cervix
3	chr11:85912000-85913600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr11:85912400-85913600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr11:85912400-85913600	Flanking Active TSS	GM12878-XiMat	blood
6	chr11:85912400-85914400	Enhancers	Fetal Kidney	kidney
7	chr11:85912800-85913600	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr11:85913000-85913600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
9	chr11:85913000-85913600	Flanking Active TSS	Primary hematopoietic stem cells	blood
10	chr11:85913000-85913600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
11	chr11:85913000-85913600	Flanking Active TSS	K562	blood
12	chr11:85913000-85914400	Flanking Active TSS	Dnd41	blood
13	chr11:85913200-85913600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
14	chr11:85913200-85913600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
15	chr11:85913200-85913600	Flanking Active TSS	Primary T cells from cord blood	blood
16	chr11:85913200-85913600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr11:85913200-85913600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:85913200-85913600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
19	chr11:85913200-85913600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:85913200-85913600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:85913200-85913600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:85913200-85913600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:85913200-85913600	Active TSS	Liver	Liver
24	chr11:85913200-85913600	Flanking Active TSS	Brain Anterior Caudate	brain
25	chr11:85913200-85913600	Flanking Active TSS	Brain Hippocampus Middle	brain
26	chr11:85913200-85913600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
27	chr11:85913200-85913600	Flanking Active TSS	Fetal Brain Male	brain
28	chr11:85913200-85913600	Flanking Active TSS	Fetal Intestine Large	intestine
29	chr11:85913200-85913600	Active TSS	Rectal Smooth Muscle	rectum
30	chr11:85913200-85913600	Active TSS	Right Ventricle	heart
31	chr11:85913200-85913600	Flanking Active TSS	NHDF-Ad	bronchial
32	chr11:85913200-85913800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:85913200-85913800	Active TSS	Primary T cells fromperipheralblood	blood
34	chr11:85913200-85913800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
35	chr11:85913200-85913800	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
36	chr11:85913200-85913800	Flanking Active TSS	Fetal Intestine Small	intestine
37	chr11:85913200-85913800	Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr11:85913200-85914000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
39	chr11:85913200-85914000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
40	chr11:85913200-85914000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
41	chr11:85913200-85914000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
42	chr11:85913200-85914000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:85913200-85914000	Active TSS	Colonic Mucosa	Colon
44	chr11:85913200-85914000	Active TSS	Duodenum Mucosa	Duodenum
45	chr11:85913200-85914000	Active TSS	Duodenum Smooth Muscle	Duodenum
46	chr11:85913200-85914000	Active TSS	Fetal Thymus	thymus
47	chr11:85913200-85914000	Active TSS	Rectal Mucosa Donor 29	rectum
48	chr11:85913200-85914000	Active TSS	Right Atrium	heart
49	chr11:85913200-85914000	Active TSS	Skeletal Muscle Female	skeletal muscle
50	chr11:85913200-85914000	Active TSS	Thymus	Thymus

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