Variant report

Variant	rs17817719
Chromosome Location	chr11:85976537-85976538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11822620	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.97[ASN][1000 genomes]
rs11822899	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12417008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12422031	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17210182	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17210189	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17210259	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17210343	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];1.00[ASN][1000 genomes]
rs17210350	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[ASN][1000 genomes]
rs17210546	1.00[EUR][1000 genomes]
rs17817610	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17817659	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17817701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2036187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2374703	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2374704	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34602206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3920052	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4474462	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59478404	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61039312	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7104068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7105530	1.00[EUR][1000 genomes]
rs7114903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7115094	1.00[EUR][1000 genomes]
rs7116376	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7116719	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7939108	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7944685	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv898055	chr11:85968623-86000757	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv972932	chr11:85975617-85977888	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85957200-85995400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:85957400-85985600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:85957400-86008000	Weak transcription	Psoas Muscle	Psoas
4	chr11:85957800-85997200	Weak transcription	Colonic Mucosa	Colon
5	chr11:85957800-85999800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:85958400-85997200	Weak transcription	Brain Germinal Matrix	brain
7	chr11:85959200-85988000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:85959200-85988600	Weak transcription	Brain Angular Gyrus	brain
9	chr11:85959200-85997600	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:85959400-85995000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:85960200-85985600	Weak transcription	Gastric	stomach
12	chr11:85960800-85988000	Weak transcription	Fetal Heart	heart
13	chr11:85961000-85996000	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr11:85961000-85997000	Weak transcription	Stomach Mucosa	stomach
15	chr11:85961400-85980600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:85961400-85985800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:85961600-85998000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr11:85961800-85988000	Weak transcription	Brain Substantia Nigra	brain
19	chr11:85963000-85984400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr11:85964000-85995000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr11:85964400-85980000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr11:85964400-85987600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr11:85966000-85992000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:85966200-85991600	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr11:85966400-85976600	Strong transcription	Fetal Thymus	thymus
26	chr11:85966400-85978600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr11:85967000-85991600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr11:85967200-85977600	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr11:85967800-85978600	Strong transcription	Placenta	Placenta
30	chr11:85967800-85981200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:85968800-85988800	Weak transcription	HSMMtube	muscle
32	chr11:85969200-85987400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr11:85969200-85988200	Weak transcription	NH-A	brain
34	chr11:85969200-85995200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr11:85969800-85988400	Weak transcription	Fetal Brain Male	brain
36	chr11:85970000-85976600	Strong transcription	Primary B cells from cord blood	blood
37	chr11:85970000-85977200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr11:85970200-85976600	Strong transcription	Dnd41	blood
39	chr11:85970200-85978000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:85970200-85978000	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr11:85970400-85976600	Strong transcription	Fetal Lung	lung
42	chr11:85970400-85977600	Strong transcription	HMEC	breast
43	chr11:85970600-85976600	Strong transcription	A549	lung
44	chr11:85971200-85980000	Weak transcription	Fetal Kidney	kidney
45	chr11:85971800-85976600	Strong transcription	Adipose Nuclei	Adipose
46	chr11:85972400-85976600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:85972400-85982000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:85972600-85976800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr11:85972600-85977000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr11:85972600-85978400	Strong transcription	Primary B cells from peripheral blood	blood

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