Variant report

Variant	rs11822964
Chromosome Location	chr11:83995114-83995115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1399616	0.85[AMR][1000 genomes]
rs17147105	0.93[ASN][1000 genomes]
rs17147112	0.93[ASN][1000 genomes]
rs17147136	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17499421	0.85[AMR][1000 genomes]
rs2054023	0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs35136629	0.85[AMR][1000 genomes]
rs7102035	0.87[ASN][1000 genomes]
rs7106602	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83985600-83996200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83986000-84000200	Weak transcription	Brain Anterior Caudate	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links