Variant report

Variant	rs2054023
Chromosome Location	chr11:83981921-83981922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11822964	0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11825839	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs17147105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17147112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17147136	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.82[YRI][hapmap];0.93[ASN][1000 genomes]
rs17147151	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs17147156	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs17147160	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes]
rs7102035	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7106602	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83975200-83982600	Enhancers	Brain Cingulate Gyrus	brain
2	chr11:83981600-83982400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:83981600-83984800	Active TSS	Brain Anterior Caudate	brain
4	chr11:83981600-83984800	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr11:83981800-83982200	Active TSS	Brain Angular Gyrus	brain
6	chr11:83981800-83983800	Weak transcription	Brain Substantia Nigra	brain
7	chr11:83981800-83984800	Active TSS	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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