Variant report

Variant	rs7106602
Chromosome Location	chr11:84001861-84001862
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11822964	0.99[EUR][1000 genomes]
rs11825839	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17147105	1.00[CHB][hapmap]
rs17147112	1.00[CHB][hapmap]
rs17147136	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];0.83[TSI][hapmap];0.99[EUR][1000 genomes]
rs17147151	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17147156	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17147160	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2054023	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1038641	chr11:83996453-84334045	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv541103	chr11:83996453-84334045	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7106602	FZD4	cis	cerebellum	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83999600-84003600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:83999600-84003600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr11:83999600-84003600	Enhancers	Osteobl	bone
4	chr11:84000000-84002200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr11:84000000-84002400	Enhancers	NH-A	brain
6	chr11:84000000-84002600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:84000200-84002800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr11:84000400-84003800	Enhancers	Brain Angular Gyrus	brain
9	chr11:84000600-84002000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:84000800-84002000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr11:84001000-84003000	Weak transcription	Brain Anterior Caudate	brain
12	chr11:84001000-84003200	Weak transcription	Fetal Lung	lung
13	chr11:84001000-84003600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:84001000-84004400	Enhancers	Brain Substantia Nigra	brain
15	chr11:84001400-84002000	Enhancers	GM12878-XiMat	blood
16	chr11:84001600-84002600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:84001600-84002600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:84001800-84002600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:84001800-84003200	Weak transcription	Brain Hippocampus Middle	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links