Variant report

Variant	rs11823312
Chromosome Location	chr11:121508987-121508988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11607597	1.00[AMR][1000 genomes]
rs11825063	1.00[AMR][1000 genomes]
rs11827084	1.00[AMR][1000 genomes]
rs12287560	1.00[AMR][1000 genomes]
rs7124961	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv34768	chr11:121452651-121534938	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv818867	chr11:121472993-121534938	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2757477	chr11:121473598-121540642	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2759866	chr11:121473598-121540642	Genic enhancers Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121463000-121525400	Weak transcription	Fetal Kidney	kidney
2	chr11:121492000-121525000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:121494400-121509400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:121495000-121520400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:121498000-121520200	Weak transcription	Brain Substantia Nigra	brain
6	chr11:121498600-121514400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:121498600-121526200	Weak transcription	Spleen	Spleen
8	chr11:121500200-121516400	Weak transcription	Brain Hippocampus Middle	brain
9	chr11:121501600-121514600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:121503600-121509400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:121503800-121520800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr11:121505200-121525600	Weak transcription	Liver	Liver
13	chr11:121505800-121509600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:121505800-121520400	Weak transcription	Primary T cells from cord blood	blood
15	chr11:121506200-121525800	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr11:121506800-121514200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:121507400-121509400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr11:121507600-121513200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:121507600-121514400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr11:121507600-121516400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:121508000-121509000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr11:121508000-121509200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr11:121508000-121509400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr11:121508000-121513800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr11:121508000-121514200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr11:121508200-121509400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr11:121508200-121514200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:121508200-121514400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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