Variant report

Variant	rs11827084
Chromosome Location	chr11:121371299-121371300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11607597	1.00[AMR][1000 genomes]
rs11823312	1.00[AMR][1000 genomes]
rs11825063	1.00[AMR][1000 genomes]
rs12287560	1.00[AMR][1000 genomes]
rs12575713	1.00[AMR][1000 genomes]
rs7124961	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv522474	chr11:121356968-121436270	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121349800-121393000	Weak transcription	Colonic Mucosa	Colon
2	chr11:121350000-121401400	Weak transcription	Fetal Brain Male	brain
3	chr11:121350400-121393200	Weak transcription	Gastric	stomach
4	chr11:121351400-121384600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:121352800-121377600	Strong transcription	HepG2	liver
6	chr11:121353600-121377000	Weak transcription	Pancreas	Pancrea
7	chr11:121353800-121374200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:121359200-121384200	Weak transcription	Fetal Stomach	stomach
9	chr11:121359800-121377000	Weak transcription	Esophagus	oesophagus
10	chr11:121360800-121384400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:121364000-121375800	Strong transcription	Liver	Liver
12	chr11:121365800-121372200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:121365800-121374000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr11:121365800-121374600	Strong transcription	Dnd41	blood
15	chr11:121365800-121377200	Weak transcription	Small Intestine	intestine
16	chr11:121365800-121392600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:121366000-121373600	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr11:121366000-121374200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr11:121366000-121374600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:121366200-121372800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:121366200-121373200	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr11:121366200-121373400	Strong transcription	Fetal Thymus	thymus
23	chr11:121366200-121373600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr11:121366400-121375200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr11:121366400-121376400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr11:121366600-121371600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:121366600-121372800	Strong transcription	Primary hematopoietic stem cells	blood
28	chr11:121366800-121371400	Strong transcription	H9 Cell Line	embryonic stem cell
29	chr11:121366800-121371600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr11:121366800-121371800	Strong transcription	Duodenum Mucosa	Duodenum
31	chr11:121366800-121372800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr11:121366800-121373800	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr11:121366800-121374600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr11:121367000-121372800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr11:121367200-121373600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr11:121367200-121376600	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr11:121367400-121371800	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr11:121367400-121373800	Strong transcription	Primary T cells from cord blood	blood
39	chr11:121367800-121374400	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr11:121368000-121375800	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr11:121368000-121378800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr11:121368400-121371600	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr11:121368400-121372600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
44	chr11:121368400-121395800	Weak transcription	Fetal Kidney	kidney
45	chr11:121368600-121377000	Weak transcription	Aorta	Aorta
46	chr11:121368600-121387000	Weak transcription	Rectal Smooth Muscle	rectum
47	chr11:121368800-121372600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr11:121368800-121372800	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr11:121368800-121378600	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr11:121369000-121372800	Strong transcription	HUES48 Cell Line	embryonic stem cell

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