Variant report

Variant	rs7124961
Chromosome Location	chr11:121328349-121328350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	WRNIP1	chr11:121326655-121328851	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:121325023..121328765-chr11:121335029..121337208,3	MCF-7	breast:
2	chr11:121322754..121325541-chr11:121327812..121329887,2	K562	blood:
3	chr11:121325093..121328754-chr11:121330398..121334038,4	MCF-7	breast:
4	chr11:121306080..121308554-chr11:121327540..121330360,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000246790	TF binding region
ENSG00000246790	Chromatin interaction
ENSG00000137642	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11607597	1.00[AMR][1000 genomes]
rs11823312	1.00[AMR][1000 genomes]
rs11825063	1.00[AMR][1000 genomes]
rs11827084	1.00[AMR][1000 genomes]
rs12287560	1.00[AMR][1000 genomes]
rs12575713	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121323600-121334600	Weak transcription	Aorta	Aorta
2	chr11:121323800-121335000	Weak transcription	Left Ventricle	heart
3	chr11:121323800-121336800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:121323800-121336800	Weak transcription	Gastric	stomach
5	chr11:121324000-121328400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr11:121324200-121328400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr11:121324200-121335200	Weak transcription	Right Atrium	heart
8	chr11:121324600-121330000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:121324800-121330000	Weak transcription	Fetal Lung	lung
10	chr11:121324800-121330600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr11:121324800-121333600	Weak transcription	NHEK	skin
12	chr11:121324800-121333800	Weak transcription	HMEC	breast
13	chr11:121325000-121330000	Weak transcription	Fetal Stomach	stomach
14	chr11:121325000-121330000	Weak transcription	Thymus	Thymus
15	chr11:121325000-121330200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr11:121325000-121330600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr11:121325000-121331600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:121325000-121333600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:121325000-121335200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:121325000-121336800	Weak transcription	Colonic Mucosa	Colon
21	chr11:121325200-121331600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr11:121325400-121330000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:121325400-121338000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr11:121325600-121329600	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr11:121325600-121330000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:121325600-121335000	Weak transcription	Esophagus	oesophagus
27	chr11:121326000-121330000	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr11:121326000-121330000	Weak transcription	Colon Smooth Muscle	Colon
29	chr11:121326000-121330200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:121326200-121329800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr11:121326200-121330000	Genic enhancers	Primary T cells fromperipheralblood	blood
32	chr11:121326200-121332800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:121326200-121334600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr11:121326200-121335200	Weak transcription	Fetal Brain Male	brain
35	chr11:121326400-121328400	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr11:121326400-121329600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr11:121326400-121329600	Weak transcription	Fetal Thymus	thymus
38	chr11:121326400-121329800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr11:121326400-121329800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr11:121326400-121330000	Weak transcription	Brain Angular Gyrus	brain
41	chr11:121326800-121328400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr11:121326800-121328600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
43	chr11:121326800-121329400	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr11:121326800-121330600	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr11:121326800-121330600	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr11:121327000-121328400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr11:121327000-121330600	Enhancers	H1 Cell Line	embryonic stem cell
48	chr11:121327000-121330800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr11:121327200-121328600	Enhancers	Fetal Brain Female	brain
50	chr11:121327200-121329200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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