Variant report
| Variant | rs11827330 |
|---|---|
| Chromosome Location | chr11:60033574-60033575 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:7 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:60032822..60033979-chr11:60101691..60102332,4 | MCF-7 | breast: | |
| 2 | chr11:60032810..60033796-chr11:60252992..60253975,8 | MCF-7 | breast: | |
| 3 | chr11:60032866..60033678-chr11:60386156..60387030,2 | MCF-7 | breast: | |
| 4 | chr11:60033101..60034036-chr11:60236873..60237631,2 | MCF-7 | breast: | |
| 5 | chr11:60033115..60033927-chr11:60253131..60253845,3 | MCF-7 | breast: | |
| 6 | chr11:60033229..60033763-chr11:60252978..60253976,4 | K562 | blood: | |
| 7 | chr11:60032789..60033679-chr11:60101235..60102123,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000166926 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs11822138 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11823254 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56991152 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57081791 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58088198 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7102207 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7119896 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73483287 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73483295 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73485303 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73485327 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73485335 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73485342 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7949128 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7951777 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832174 | chr11:59909267-60073908 | Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1053558 | chr11:59979460-60061209 | Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv3435505 | chr11:60006972-60051885 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:60033000-60033600 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
