Variant report

Variant	rs57081791
Chromosome Location	chr11:59973913-59973914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11822138	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823254	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11827330	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56991152	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58088198	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7102207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7119896	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73483287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73483295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485303	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485327	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485335	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485342	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949128	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7951777	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468579	chr11:59814287-59975400	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv555150	chr11:59814287-59975400	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv832174	chr11:59909267-60073908	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59971800-59974800	Enhancers	HUVEC	blood vessel
2	chr11:59972800-59974800	Enhancers	GM12878-XiMat	blood
3	chr11:59973600-59984200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr11:59973800-59982000	Strong transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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