Variant report

Variant	rs58088198
Chromosome Location	chr11:59982742-59982743
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11822138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11827330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56991152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57081791	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7102207	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7119896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73483287	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73483295	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7951777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832174	chr11:59909267-60073908	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1053558	chr11:59979460-60061209	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59973600-59984200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr11:59981000-59983800	Enhancers	HUVEC	blood vessel
3	chr11:59982000-59983400	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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