Variant report

Variant	rs11828938
Chromosome Location	chr11:45523626-45523627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10838479	0.93[AFR][1000 genomes]
rs11038496	0.95[AFR][1000 genomes]
rs11821183	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11821192	1.00[AMR][1000 genomes]
rs11828874	1.00[AMR][1000 genomes]
rs12363740	0.89[AFR][1000 genomes]
rs12365982	0.95[AFR][1000 genomes]
rs1488669	0.95[AFR][1000 genomes]
rs34066707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456015	1.00[AMR][1000 genomes]
rs73456024	1.00[AMR][1000 genomes]
rs73458175	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458185	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458187	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458191	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7952241	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1045831	chr11:45419113-45580407	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45521200-45524400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:45521600-45524200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:45521600-45524200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr11:45521600-45524200	Enhancers	Fetal Muscle Leg	muscle
5	chr11:45521800-45523800	Enhancers	Fetal Brain Female	brain
6	chr11:45522000-45523800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:45522200-45523800	Enhancers	Fetal Brain Male	brain
8	chr11:45522200-45523800	Enhancers	Right Atrium	heart
9	chr11:45522400-45523800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr11:45522400-45524400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:45522400-45524400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:45522600-45524000	Enhancers	Fetal Stomach	stomach
13	chr11:45522800-45523800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr11:45522800-45524000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:45523000-45523800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr11:45523000-45524200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr11:45523200-45523800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:45523200-45523800	Enhancers	Left Ventricle	heart
19	chr11:45523200-45523800	Bivalent Enhancer	HepG2	liver
20	chr11:45523400-45523800	Enhancers	Fetal Heart	heart
21	chr11:45523400-45523800	Enhancers	Fetal Intestine Small	intestine
22	chr11:45523400-45524200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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