Variant report
| Variant | rs73458185 |
|---|---|
| Chromosome Location | chr11:45516374-45516375 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:45507454..45509790-chr11:45515966..45518596,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10838479 | 0.98[AFR][1000 genomes] |
| rs11038496 | 1.00[AFR][1000 genomes] |
| rs11821183 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11821192 | 1.00[AMR][1000 genomes] |
| rs11828874 | 1.00[AMR][1000 genomes] |
| rs11828938 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12363740 | 0.93[AFR][1000 genomes] |
| rs12365982 | 1.00[AFR][1000 genomes] |
| rs1488669 | 1.00[AFR][1000 genomes] |
| rs34066707 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73456015 | 1.00[AMR][1000 genomes] |
| rs73456024 | 1.00[AMR][1000 genomes] |
| rs73458175 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73458187 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73458191 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7952241 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530619 | chr11:45294176-45553928 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv1045831 | chr11:45419113-45580407 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv897310 | chr11:45487041-45631953 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:45516200-45521200 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
