Variant report

Variant	rs7952241
Chromosome Location	chr11:45506999-45507000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10838479	0.98[AFR][1000 genomes]
rs11038496	1.00[AFR][1000 genomes]
rs11821183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11821192	1.00[AMR][1000 genomes]
rs11828874	1.00[AMR][1000 genomes]
rs11828938	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12363740	0.93[AFR][1000 genomes]
rs12365982	1.00[AFR][1000 genomes]
rs1488669	1.00[AFR][1000 genomes]
rs34066707	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456015	1.00[AMR][1000 genomes]
rs73456024	1.00[AMR][1000 genomes]
rs73458175	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1045831	chr11:45419113-45580407	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45490200-45510800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:45505000-45510800	Weak transcription	Brain Anterior Caudate	brain
3	chr11:45505400-45507600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:45505600-45507200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr11:45505800-45507200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr11:45505800-45507400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr11:45506000-45507200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:45506200-45507000	Bivalent Enhancer	HepG2	liver
9	chr11:45506400-45507200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:45506400-45507200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:45506600-45507200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr11:45506600-45507200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr11:45506600-45507200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:45506800-45507000	Enhancers	Adipose Nuclei	Adipose
15	chr11:45506800-45510800	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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