Variant report

Variant	rs11831355
Chromosome Location	chr12:121064283-121064284
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10849771	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11065171	0.80[EUR][1000 genomes]
rs11065172	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12369169	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1616213	0.82[ASN][1000 genomes]
rs2686553	0.82[ASN][1000 genomes]
rs2859264	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2859265	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs508699	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs553328	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56182086	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs693074	0.82[ASN][1000 genomes]
rs7299238	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73405665	0.80[EUR][1000 genomes]
rs7955217	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121063800-121066400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr12:121064000-121066600	Weak transcription	A549	lung
3	chr12:121064000-121069000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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