Variant report

Variant	rs73405665
Chromosome Location	chr12:121059935-121059936
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10774563	1.00[ASN][1000 genomes]
rs11065172	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11831355	0.80[EUR][1000 genomes]
rs12369169	0.80[EUR][1000 genomes]
rs1616213	0.82[EUR][1000 genomes]
rs2686553	0.82[EUR][1000 genomes]
rs2859267	0.82[EUR][1000 genomes]
rs693074	0.82[EUR][1000 genomes]
rs7299238	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9804812	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121057400-121060200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr12:121057400-121063600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links