Variant report

Variant	rs12369169
Chromosome Location	chr12:121063709-121063710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10774563	0.82[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap]
rs10849771	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11065171	0.80[EUR][1000 genomes]
rs11065172	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1151874	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs11831355	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1616213	0.91[CHB][hapmap];0.86[CHD][hapmap]
rs2859264	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2859265	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs508699	0.82[EUR][1000 genomes]
rs553328	0.81[CEU][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs56182086	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs693074	0.91[CHB][hapmap];0.86[CHD][hapmap];0.82[MEX][hapmap]
rs7299238	0.83[CEU][hapmap];0.92[CHB][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.83[MKK][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73405665	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12369169	TAOK3	cis	parietal	SCAN
rs12369169	GPR81	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121062800-121063800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr12:121063400-121063800	Active TSS	A549	lung
3	chr12:121063600-121063800	Active TSS	K562	blood
4	chr12:121063600-121064000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:121063600-121064000	Active TSS	Duodenum Mucosa	Duodenum
6	chr12:121063600-121064000	Enhancers	Placenta	Placenta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links