Variant report

Variant	rs11831818
Chromosome Location	chr12:64617293-64617294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11831579	1.00[ASW][hapmap]
rs11834820	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17100200	1.00[ASW][hapmap]
rs17100259	0.82[YRI][hapmap]
rs17100272	0.81[YRI][hapmap]
rs35892030	1.00[AMR][1000 genomes]
rs56015728	1.00[AMR][1000 genomes]
rs56684025	1.00[AMR][1000 genomes]
rs57378562	1.00[AMR][1000 genomes]
rs58914823	1.00[AMR][1000 genomes]
rs59167764	1.00[AMR][1000 genomes]
rs73311817	1.00[AMR][1000 genomes]
rs73323059	1.00[AMR][1000 genomes]
rs73323067	1.00[AMR][1000 genomes]
rs73325081	0.86[AFR][1000 genomes]
rs74100222	1.00[AMR][1000 genomes]
rs74100224	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64616600-64626000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:64616600-64626200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr12:64616800-64617400	Enhancers	Dnd41	blood
4	chr12:64616800-64623000	Weak transcription	Brain Angular Gyrus	brain
5	chr12:64617000-64623000	Weak transcription	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links