Variant report

Variant	rs58914823
Chromosome Location	chr12:64830964-64830965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:64829607..64832922-chr12:64840087..64843068,3	MCF-7	breast:
2	chr12:64828995..64831202-chr12:64846027..64847818,2	K562	blood:
3	chr12:64830081..64832992-chr12:64836076..64837928,2	K562	blood:
4	chr12:64828854..64832182-chr12:64844555..64846990,4	MCF-7	breast:
5	chr12:64805953..64807746-chr12:64828449..64831352,2	MCF-7	breast:
6	chr12:64811364..64814549-chr12:64829971..64833473,4	K562	blood:
7	chr12:64830925..64835229-chr12:64836428..64840746,5	K562	blood:
8	chr12:64797073..64798953-chr12:64828676..64831277,2	K562	blood:
9	chr12:64829182..64831009-chr12:64844953..64846460,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000255566	Chromatin interaction
ENSG00000183735	Chromatin interaction
ENSG00000184575	Chromatin interaction

rs_ID	r²[population]
rs11175461	1.00[AMR][1000 genomes]
rs11831818	1.00[AMR][1000 genomes]
rs11834820	1.00[AMR][1000 genomes]
rs12312169	1.00[AMR][1000 genomes]
rs35892030	1.00[AMR][1000 genomes]
rs55806292	1.00[EUR][1000 genomes]
rs56015728	1.00[AMR][1000 genomes]
rs56691393	1.00[EUR][1000 genomes]
rs57378562	1.00[AMR][1000 genomes]
rs58090127	1.00[AMR][1000 genomes]
rs60715684	1.00[AMR][1000 genomes]
rs61442177	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6581532	1.00[EUR][1000 genomes]
rs73311817	1.00[AMR][1000 genomes]
rs74097962	1.00[EUR][1000 genomes]
rs74097963	1.00[EUR][1000 genomes]
rs74097971	1.00[EUR][1000 genomes]
rs74098400	1.00[AMR][1000 genomes]
rs74100209	1.00[EUR][1000 genomes]
rs74100222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74100224	1.00[AMR][1000 genomes]
rs7968227	1.00[EUR][1000 genomes]

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64799400-64844600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:64799800-64839600	Weak transcription	Fetal Heart	heart
3	chr12:64800600-64844000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:64800800-64842400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:64801600-64843600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr12:64802400-64843000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr12:64802400-64844000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:64802600-64844000	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr12:64802800-64842800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr12:64802800-64843200	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr12:64802800-64843200	Strong transcription	Dnd41	blood
12	chr12:64802800-64844000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr12:64803000-64844200	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr12:64803600-64836200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr12:64803600-64837400	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr12:64803600-64837600	Strong transcription	Skeletal Muscle Male	skeletal muscle
17	chr12:64803600-64842000	Strong transcription	NHDF-Ad	bronchial
18	chr12:64803600-64842200	Strong transcription	H1 Cell Line	embryonic stem cell
19	chr12:64803600-64842200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr12:64803600-64842200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr12:64803600-64842200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr12:64803600-64842400	Strong transcription	Hela-S3	cervix
23	chr12:64803600-64843000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr12:64803600-64843000	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr12:64803600-64843400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr12:64803600-64843600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr12:64803800-64831200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr12:64803800-64834400	Strong transcription	Brain Anterior Caudate	brain
29	chr12:64803800-64836600	Strong transcription	Fetal Thymus	thymus
30	chr12:64803800-64837200	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr12:64803800-64837400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr12:64803800-64837800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr12:64803800-64839400	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr12:64803800-64842000	Strong transcription	Fetal Intestine Large	intestine
35	chr12:64803800-64842200	Strong transcription	NH-A	brain
36	chr12:64803800-64843000	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr12:64803800-64844200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr12:64803800-64844800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr12:64804000-64844000	Strong transcription	HSMM	muscle
40	chr12:64804200-64836600	Strong transcription	Duodenum Mucosa	Duodenum
41	chr12:64804200-64837200	Strong transcription	Adipose Nuclei	Adipose
42	chr12:64804200-64843200	Strong transcription	Liver	Liver
43	chr12:64804200-64843400	Strong transcription	Osteobl	bone
44	chr12:64804400-64837400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr12:64804800-64837400	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr12:64804800-64842000	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr12:64804800-64843000	Strong transcription	Primary hematopoietic stem cells	blood
48	chr12:64805000-64842800	Strong transcription	Fetal Muscle Leg	muscle
49	chr12:64805200-64834400	Strong transcription	Brain Inferior Temporal Lobe	brain
50	chr12:64805400-64842800	Strong transcription	Fetal Muscle Trunk	muscle

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