Variant report

Variant	rs74097962
Chromosome Location	chr12:64633903-64633904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55806292	1.00[EUR][1000 genomes]
rs56691393	1.00[EUR][1000 genomes]
rs58914823	1.00[EUR][1000 genomes]
rs6581532	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74097931	1.00[EUR][1000 genomes]
rs74097945	1.00[EUR][1000 genomes]
rs74097963	1.00[EUR][1000 genomes]
rs74097971	1.00[EUR][1000 genomes]
rs74100209	1.00[EUR][1000 genomes]
rs74100222	1.00[EUR][1000 genomes]
rs7968227	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64623400-64639400	Weak transcription	Brain Angular Gyrus	brain
2	chr12:64630800-64634000	Weak transcription	Brain Anterior Caudate	brain
3	chr12:64630800-64634400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr12:64631000-64634400	Weak transcription	HepG2	liver
5	chr12:64631200-64634000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr12:64631400-64634000	Weak transcription	Brain Hippocampus Middle	brain
7	chr12:64632200-64635800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr12:64633800-64634600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr12:64633800-64634800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr12:64633800-64635000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr12:64633800-64635000	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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