Variant report

Variant	rs7968227
Chromosome Location	chr12:64638098-64638099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55806292	1.00[EUR][1000 genomes]
rs56691393	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58914823	1.00[EUR][1000 genomes]
rs6581532	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74097931	1.00[EUR][1000 genomes]
rs74097945	1.00[EUR][1000 genomes]
rs74097962	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74097963	1.00[EUR][1000 genomes]
rs74097971	1.00[EUR][1000 genomes]
rs74100209	1.00[EUR][1000 genomes]
rs74100222	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64623400-64639400	Weak transcription	Brain Angular Gyrus	brain
2	chr12:64634800-64639200	Weak transcription	Brain Hippocampus Middle	brain
3	chr12:64634800-64639600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr12:64634800-64639800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr12:64635600-64639600	Weak transcription	Brain Substantia Nigra	brain
6	chr12:64637600-64638200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr12:64637600-64639400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr12:64637600-64646000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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