Variant report

Variant	rs74097963
Chromosome Location	chr12:64634830-64634831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55806292	1.00[EUR][1000 genomes]
rs56691393	1.00[EUR][1000 genomes]
rs58914823	1.00[EUR][1000 genomes]
rs6581532	1.00[EUR][1000 genomes]
rs74097931	1.00[EUR][1000 genomes]
rs74097945	1.00[EUR][1000 genomes]
rs74097962	1.00[EUR][1000 genomes]
rs74097971	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74100209	1.00[EUR][1000 genomes]
rs74100222	1.00[EUR][1000 genomes]
rs7968227	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64623400-64639400	Weak transcription	Brain Angular Gyrus	brain
2	chr12:64632200-64635800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr12:64633800-64635000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr12:64633800-64635000	Enhancers	Brain Substantia Nigra	brain
5	chr12:64634400-64635000	Enhancers	Ovary	ovary
6	chr12:64634400-64635000	Enhancers	HepG2	liver
7	chr12:64634600-64635000	Enhancers	NHDF-Ad	bronchial
8	chr12:64634600-64635200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr12:64634800-64635000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr12:64634800-64635000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr12:64634800-64635600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr12:64634800-64639200	Weak transcription	Brain Hippocampus Middle	brain
13	chr12:64634800-64639600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr12:64634800-64639800	Weak transcription	Brain Cingulate Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links