Variant report

Variant	rs58090127
Chromosome Location	chr12:64901032-64901033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:64899993..64902635-chr12:64973489..64976285,2	K562	blood:
2	chr12:64845355..64847313-chr12:64898915..64901595,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C12orf56-1	chr12:64900946-64901255	ENSG00000256199

Variant related genes	Relation type
ENSG00000183735	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11175461	1.00[AMR][1000 genomes]
rs12312169	1.00[AMR][1000 genomes]
rs56015728	1.00[AMR][1000 genomes]
rs58914823	1.00[AMR][1000 genomes]
rs60715684	1.00[AMR][1000 genomes]
rs61442177	1.00[AMR][1000 genomes]
rs73311817	1.00[AMR][1000 genomes]
rs74098400	1.00[AMR][1000 genomes]
rs74100222	1.00[AMR][1000 genomes]
rs74100224	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832443	chr12:64878856-65057265	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64871000-64908200	Weak transcription	Psoas Muscle	Psoas
2	chr12:64885400-64904400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr12:64887800-64902800	Weak transcription	Colonic Mucosa	Colon
4	chr12:64888400-64904600	Weak transcription	Left Ventricle	heart
5	chr12:64889400-64903800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr12:64890600-64904600	Weak transcription	HSMMtube	muscle
7	chr12:64891200-64902000	Weak transcription	Brain Substantia Nigra	brain
8	chr12:64892000-64903000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr12:64892000-64903800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr12:64893000-64901400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr12:64893800-64904400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr12:64894400-64902400	Weak transcription	Brain Hippocampus Middle	brain
13	chr12:64894400-64903200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr12:64894400-64903400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr12:64895000-64902600	Weak transcription	Fetal Stomach	stomach
16	chr12:64895600-64903600	Weak transcription	GM12878-XiMat	blood
17	chr12:64895800-64903400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr12:64895800-64912200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr12:64896000-64904600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr12:64896200-64903600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr12:64896200-64905800	Weak transcription	Dnd41	blood
22	chr12:64896600-64916000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr12:64896800-64903200	Weak transcription	Placenta	Placenta
24	chr12:64900800-64902200	Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr12:64901000-64901200	Flanking Active TSS	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links