Variant report

Variant	rs61442177
Chromosome Location	chr12:64873706-64873707
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr12:64873586-64873786	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr12:64869134..64870653-chr12:64873170..64875671,2	MCF-7	breast:
2	chr12:64872953..64874696-chr12:64881969..64883794,2	MCF-7	breast:
3	chr12:64872684..64875625-chr12:64876455..64879881,3	MCF-7	breast:
4	chr12:64871451..64874406-chr12:64887006..64888726,2	K562	blood:

Variant related genes	Relation type
TBK1	TF binding region
ENSG00000183735	Chromatin interaction

rs_ID	r²[population]
rs11175461	1.00[AMR][1000 genomes]
rs12312169	1.00[AMR][1000 genomes]
rs56015728	1.00[AMR][1000 genomes]
rs58090127	1.00[AMR][1000 genomes]
rs58914823	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60715684	1.00[AMR][1000 genomes]
rs73311817	1.00[AMR][1000 genomes]
rs74098400	1.00[AMR][1000 genomes]
rs74100222	1.00[AMR][1000 genomes]
rs74100224	1.00[AMR][1000 genomes]

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64847000-64900800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:64853400-64896800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr12:64854000-64875800	Weak transcription	Stomach Mucosa	stomach
4	chr12:64854000-64886600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr12:64854000-64893000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr12:64854400-64897200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr12:64854600-64894000	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr12:64854800-64893600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr12:64855600-64887600	Strong transcription	Dnd41	blood
10	chr12:64858200-64874600	Strong transcription	Duodenum Mucosa	Duodenum
11	chr12:64858400-64877800	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr12:64862400-64885800	Strong transcription	HSMM	muscle
13	chr12:64862800-64896800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr12:64863000-64882400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr12:64863400-64879800	Weak transcription	Brain Angular Gyrus	brain
16	chr12:64864000-64887000	Weak transcription	Colonic Mucosa	Colon
17	chr12:64866000-64897000	Weak transcription	Esophagus	oesophagus
18	chr12:64869200-64883400	Weak transcription	Gastric	stomach
19	chr12:64869200-64883800	Weak transcription	Aorta	Aorta
20	chr12:64869400-64877400	Weak transcription	Fetal Stomach	stomach
21	chr12:64869400-64878000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr12:64869400-64879600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr12:64869400-64880200	Weak transcription	Pancreas	Pancrea
24	chr12:64869400-64880200	Weak transcription	Spleen	Spleen
25	chr12:64869600-64873800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr12:64869600-64873800	Weak transcription	HepG2	liver
27	chr12:64869600-64875200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr12:64869600-64875800	Weak transcription	Ovary	ovary
29	chr12:64869600-64876000	Weak transcription	Brain Anterior Caudate	brain
30	chr12:64869600-64878200	Weak transcription	HSMMtube	muscle
31	chr12:64869600-64878800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr12:64869600-64879600	Weak transcription	Brain Substantia Nigra	brain
33	chr12:64869600-64880000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr12:64869600-64880200	Weak transcription	Lung	lung
35	chr12:64869600-64880200	Weak transcription	Right Ventricle	heart
36	chr12:64869600-64881000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr12:64869600-64883800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr12:64869600-64884000	Weak transcription	Brain Germinal Matrix	brain
39	chr12:64869600-64892000	Weak transcription	Small Intestine	intestine
40	chr12:64869600-64893000	Weak transcription	Fetal Brain Male	brain
41	chr12:64869800-64873800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr12:64869800-64873800	Weak transcription	NHLF	lung
43	chr12:64869800-64876000	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr12:64869800-64876400	Weak transcription	Left Ventricle	heart
45	chr12:64869800-64880000	Weak transcription	NHEK	skin
46	chr12:64869800-64881400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr12:64869800-64883800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr12:64869800-64888600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr12:64869800-64895400	Weak transcription	Fetal Kidney	kidney
50	chr12:64870000-64882400	Weak transcription	Placenta Amnion	Placenta Amnion

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