Variant report

Variant	rs12312169
Chromosome Location	chr12:64975416-64975417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11175461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56015728	1.00[AMR][1000 genomes]
rs58090127	1.00[AMR][1000 genomes]
rs58914823	1.00[AMR][1000 genomes]
rs60715684	1.00[AMR][1000 genomes]
rs61442177	1.00[AMR][1000 genomes]
rs74098400	1.00[AMR][1000 genomes]
rs74100222	1.00[AMR][1000 genomes]
rs74100224	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832443	chr12:64878856-65057265	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1048199	chr12:64951666-65021700	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
3	nsv541512	chr12:64951666-65021700	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64963800-64976400	Weak transcription	Right Atrium	heart
2	chr12:64970600-64975800	Weak transcription	Spleen	Spleen
3	chr12:64971600-64978000	Weak transcription	Placenta	Placenta
4	chr12:64972600-64977600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:64972800-64975600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr12:64972800-64975800	Weak transcription	Psoas Muscle	Psoas
7	chr12:64974600-64976600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr12:64974600-64977200	Enhancers	Adipose Nuclei	Adipose
9	chr12:64974800-64976600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr12:64975200-64978400	Enhancers	Fetal Heart	heart
11	chr12:64975400-64976400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr12:64975400-64978200	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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