Variant report

Variant	rs60715684
Chromosome Location	chr12:64897072-64897073
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11175461	1.00[AMR][1000 genomes]
rs12312169	1.00[AMR][1000 genomes]
rs56015728	1.00[AMR][1000 genomes]
rs58090127	1.00[AMR][1000 genomes]
rs58914823	1.00[AMR][1000 genomes]
rs61442177	1.00[AMR][1000 genomes]
rs73311817	1.00[AMR][1000 genomes]
rs74098400	1.00[AMR][1000 genomes]
rs74100222	1.00[AMR][1000 genomes]
rs74100224	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832443	chr12:64878856-65057265	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64847000-64900800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:64854400-64897200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr12:64871000-64908200	Weak transcription	Psoas Muscle	Psoas
4	chr12:64884600-64897800	Weak transcription	Aorta	Aorta
5	chr12:64885400-64897400	Weak transcription	Gastric	stomach
6	chr12:64885400-64904400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr12:64887600-64898200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr12:64887800-64902800	Weak transcription	Colonic Mucosa	Colon
9	chr12:64888400-64904600	Weak transcription	Left Ventricle	heart
10	chr12:64889400-64903800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr12:64890600-64904600	Weak transcription	HSMMtube	muscle
12	chr12:64891200-64902000	Weak transcription	Brain Substantia Nigra	brain
13	chr12:64892000-64903000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr12:64892000-64903800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr12:64892400-64897400	Weak transcription	Brain Angular Gyrus	brain
16	chr12:64892400-64897400	Weak transcription	HMEC	breast
17	chr12:64892400-64899000	Weak transcription	Lung	lung
18	chr12:64892400-64899600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr12:64892600-64897400	Weak transcription	Small Intestine	intestine
20	chr12:64892800-64899000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr12:64893000-64901400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr12:64893800-64904400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr12:64894000-64899400	Weak transcription	Fetal Brain Male	brain
24	chr12:64894200-64897400	Weak transcription	Hela-S3	cervix
25	chr12:64894200-64897800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr12:64894200-64898200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr12:64894400-64897600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr12:64894400-64902400	Weak transcription	Brain Hippocampus Middle	brain
29	chr12:64894400-64903200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr12:64894400-64903400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr12:64894600-64897200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr12:64894600-64897200	Weak transcription	Fetal Intestine Large	intestine
33	chr12:64894600-64900200	Weak transcription	Fetal Muscle Leg	muscle
34	chr12:64895000-64899000	Weak transcription	Fetal Intestine Small	intestine
35	chr12:64895000-64900800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr12:64895000-64902600	Weak transcription	Fetal Stomach	stomach
37	chr12:64895600-64897200	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr12:64895600-64897200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr12:64895600-64897200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr12:64895600-64897200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr12:64895600-64897400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr12:64895600-64897400	Weak transcription	NH-A	brain
43	chr12:64895600-64897600	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr12:64895600-64897600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr12:64895600-64897600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr12:64895600-64897600	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr12:64895600-64898000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr12:64895600-64903600	Weak transcription	GM12878-XiMat	blood
49	chr12:64895800-64897400	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr12:64895800-64897400	Weak transcription	Rectal Mucosa Donor 29	rectum

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