Variant report

Variant	rs17100200
Chromosome Location	chr12:64636749-64636750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:64237148..64239088-chr12:64635551..64637896,2	MCF-7	breast:
2	chr12:64632675..64634327-chr12:64635470..64637119,2	MCF-7	breast:
3	chr12:64635564..64638055-chr12:64796494..64799405,2	MCF-7	breast:
4	chr12:64634059..64637961-chr12:64638690..64641473,3	MCF-7	breast:
5	chr12:64615595..64617178-chr12:64636452..64638464,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174206	Chromatin interaction
ENSG00000184575	Chromatin interaction
ENSG00000196935	Chromatin interaction
ENSG00000243024	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10735923	1.00[EUR][1000 genomes]
rs10784399	1.00[EUR][1000 genomes]
rs11831579	1.00[ASW][hapmap];0.93[LWK][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11831818	1.00[ASW][hapmap]
rs11834820	1.00[ASW][hapmap]
rs11836616	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1347577	1.00[EUR][1000 genomes]
rs1613429	1.00[EUR][1000 genomes]
rs1708205	1.00[EUR][1000 genomes]
rs17100256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17100259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1836865	1.00[EUR][1000 genomes]
rs1865799	1.00[EUR][1000 genomes]
rs2335358	1.00[EUR][1000 genomes]
rs2878282	0.81[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4237926	1.00[EUR][1000 genomes]
rs4503636	1.00[EUR][1000 genomes]
rs4606564	1.00[EUR][1000 genomes]
rs4763013	1.00[EUR][1000 genomes]
rs55973281	1.00[EUR][1000 genomes]
rs56011088	1.00[EUR][1000 genomes]
rs56784792	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58160282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59450427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60145227	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60242151	1.00[EUR][1000 genomes]
rs73311817	1.00[EUR][1000 genomes]
rs73311823	1.00[EUR][1000 genomes]
rs73311828	1.00[EUR][1000 genomes]
rs73325081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73325098	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73327118	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73327129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73327138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73327140	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73327152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73327153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7973979	1.00[EUR][1000 genomes]
rs7974953	1.00[EUR][1000 genomes]
rs9888445	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64623400-64639400	Weak transcription	Brain Angular Gyrus	brain
2	chr12:64634800-64639200	Weak transcription	Brain Hippocampus Middle	brain
3	chr12:64634800-64639600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr12:64634800-64639800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr12:64635600-64639600	Weak transcription	Brain Substantia Nigra	brain
6	chr12:64636400-64636800	Enhancers	Fetal Kidney	kidney
7	chr12:64636600-64636800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr12:64636600-64637600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr12:64636600-64637600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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