Variant report

Variant	rs1613429
Chromosome Location	chr12:64639971-64639972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:64634059..64637961-chr12:64638690..64641473,3	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10735923	0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10784393	1.00[AMR][1000 genomes]
rs10784399	1.00[EUR][1000 genomes]
rs11831579	1.00[EUR][1000 genomes]
rs11836616	1.00[EUR][1000 genomes]
rs1347577	1.00[EUR][1000 genomes]
rs1708205	1.00[EUR][1000 genomes]
rs17100200	1.00[EUR][1000 genomes]
rs17100256	1.00[EUR][1000 genomes]
rs17100259	1.00[EUR][1000 genomes]
rs1836865	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1865799	1.00[EUR][1000 genomes]
rs2335358	1.00[EUR][1000 genomes]
rs2575287	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2575288	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2643662	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2878282	1.00[EUR][1000 genomes]
rs4237926	1.00[EUR][1000 genomes]
rs4503636	0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4606564	1.00[EUR][1000 genomes]
rs4763013	1.00[EUR][1000 genomes]
rs4763014	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs55973281	1.00[EUR][1000 genomes]
rs56011088	1.00[EUR][1000 genomes]
rs56784792	1.00[EUR][1000 genomes]
rs58160282	1.00[EUR][1000 genomes]
rs59450427	1.00[EUR][1000 genomes]
rs60242151	1.00[EUR][1000 genomes]
rs73311817	1.00[EUR][1000 genomes]
rs73311823	1.00[EUR][1000 genomes]
rs73311828	1.00[EUR][1000 genomes]
rs73325081	1.00[EUR][1000 genomes]
rs73325098	1.00[EUR][1000 genomes]
rs73327118	1.00[EUR][1000 genomes]
rs73327129	1.00[EUR][1000 genomes]
rs73327138	1.00[EUR][1000 genomes]
rs73327148	1.00[EUR][1000 genomes]
rs73327152	1.00[EUR][1000 genomes]
rs73327153	1.00[EUR][1000 genomes]
rs790015	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7973979	1.00[EUR][1000 genomes]
rs7974953	1.00[EUR][1000 genomes]
rs9888445	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64637600-64646000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr12:64638200-64640400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:64639200-64640200	Enhancers	Brain Hippocampus Middle	brain
4	chr12:64639400-64640200	Enhancers	Brain Angular Gyrus	brain
5	chr12:64639600-64640200	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr12:64639600-64640200	Enhancers	Brain Substantia Nigra	brain
7	chr12:64639800-64640200	Enhancers	Brain Cingulate Gyrus	brain

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